Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0642.Seq
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 158 NYELFNRNNFSIRYWSWNYRGCWHQTCPPIVPLKIFKVYSFRLRGLVRVPYRYF 319
           N+  FN       +  WN +  W++ CP     K+ KV  F+  GL+R     F
Sbjct: 273 NFGKFNIKKVVDFFGFWNIQKTWNKKCP-----KVLKVPQFKSYGLLRTESNKF 321


>AF077545-1|AAC26306.2|  506|Caenorhabditis elegans Hypothetical
           protein H41C03.3 protein.
          Length = 506

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +2

Query: 95  CSANVSVSPRMRAXDSAAHKCNYELFNRNNFSIRYWSWNY 214
           C  NV + P   + DSA H  N   +N     I    WNY
Sbjct: 211 CLPNVLLLPDEESVDSAGHNINLAHYNCLRVLINKPGWNY 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,809,534
Number of Sequences: 27780
Number of extensions: 339823
Number of successful extensions: 771
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)