Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0642.Seq
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   8.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   8.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   8.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   8.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   8.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   8.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 495  RRKTNISESICQRCFHQ 445
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 580 TKIXTEIIFYYSMHEIFKQHF*PA 651
           T I +E I  Y MH+I K+   PA
Sbjct: 254 TPIKSEPIDAYEMHQISKKKLSPA 277


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 378  SKEGSRRANYPLPARGGSDEK*RYG 304
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 525 YCDVRGKFLDRRKTNISESICQRC 454
           +CDV GK +      +  + C RC
Sbjct: 45  HCDVIGKKIKELLPEVLNNHCNRC 68


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 116 SPRMRAXDSAAHKCNYELFNRNNFSIRYWSWNY 214
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 116 SPRMRAXDSAAHKCNYELFNRNNFSIRYWSWNY 214
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 116 SPRMRAXDSAAHKCNYELFNRNNFSIRYWSWNY 214
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 116 SPRMRAXDSAAHKCNYELFNRNNFSIRYWSWNY 214
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 116 SPRMRAXDSAAHKCNYELFNRNNFSIRYWSWNY 214
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -3

Query: 484 EHQRKHLPKVFSSIKNES*RFEGD*MRGSLRNGYH 380
           E +R   PK+ SS+ N++     +    +  N Y+
Sbjct: 305 ERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYN 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,213
Number of Sequences: 438
Number of extensions: 4692
Number of successful extensions: 26
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)