Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0641.Seq
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   1.9  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   1.9  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   1.9  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   1.9  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   1.9  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   1.9  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   1.9  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   1.9  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   1.9  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   3.3  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   4.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   5.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.7  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 63  STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 98


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 139 SGGVFQRNTVNA*RQPPADNPPATQPRHAAAYRRSG 32
           S GV     ++    PP   PP + P ++ A + SG
Sbjct: 107 STGVASPQDLSTNGAPPRSTPPLSTPSNSNATKSSG 142


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 382 ERCRPDKPSVRAFNAAI 332
           E+CRPD P     N +I
Sbjct: 264 EKCRPDPPQNLVINESI 280


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +2

Query: 338 RVKSAN*GFIGSTSFIVGLISAXNXALPXGGTSALS 445
           RVK  N GF      I   I+A   +   GG   LS
Sbjct: 64  RVKQVNNGFANLRQHIPNFIAAAFESNSRGGNKKLS 99


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 303 GGCCRTTPADI 335
           G CC+T P D+
Sbjct: 102 GRCCKTCPGDL 112


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 458 PQNVMPHPPEQTCRTXGFKII 520
           PQN++   P+Q  R    KII
Sbjct: 48  PQNIIQQQPQQARRRAFVKII 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,403
Number of Sequences: 336
Number of extensions: 2912
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)