Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0641.Seq
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    29   0.37 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.1  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p...    26   4.6  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   6.1  

>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 145 AAFTRFNGAAAGGVSELGRALRCREQNLASSR*TLRAWRIICRS 276
           AA T  NG A GG S   ++    +Q +ASS+   +AW  + +S
Sbjct: 250 AASTNTNGTA-GGTSASAKSTSAADQAVASSKPIKKAWASVAKS 292


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 122 LENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHH 238
           L +T     ++H   V P++  P+S  +YD  S  W HH
Sbjct: 165 LSSTFEMPNNIHPPEVAPMIAIPSSRSNYD--SPGWAHH 201


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 379 RCRPDKPSVRAFNAAISAGVVRQHP 305
           RC+  KP  R  N+ ++ G+V  HP
Sbjct: 16  RCKRTKPIFREPNSPVNGGLVYNHP 40


>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 469 YAASARTNMPYXWIQDNTARRR 534
           Y    RTNMPY  + +++ RRR
Sbjct: 45  YEIVCRTNMPYFRLHNSSVRRR 66


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 281 LPLRQIIRXARNVHRDDARFCSRHRNA 201
           LP R ++  ++N H DDA   SR ++A
Sbjct: 699 LPQRPLVNQSQNSHGDDAPNWSRSKSA 725


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,936
Number of Sequences: 5004
Number of extensions: 45098
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)