Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0641.Seq
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632... 44 1e-04
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510... 44 1e-04
12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773... 43 2e-04
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091... 42 5e-04
05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013 31 0.50
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116... 31 0.88
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 31 0.88
09_02_0082 - 4060018-4061604 30 1.2
03_05_0136 + 21158917-21159939,21160183-21160241,21160259-211602... 30 1.2
07_03_0124 - 13723597-13724657,13726179-13726413 29 2.0
01_06_0617 - 30643177-30643506 29 2.0
05_05_0017 + 21546434-21546841 29 2.7
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 29 2.7
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415... 28 4.7
03_05_0301 + 22928864-22929787 28 4.7
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 28 6.2
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 28 6.2
03_05_0141 - 21210176-21212140 28 6.2
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504... 28 6.2
12_02_0130 + 14026460-14027017 27 8.2
01_05_0098 - 18088331-18088376,18088703-18088935,18089078-180892... 27 8.2
>03_02_0194 +
6322499-6322654,6323540-6323596,6323702-6323907,
6324028-6324157,6324285-6324488,6324599-6324670,
6324844-6325008
Length = 329
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +3
Query: 273 QWQAAGARLIGGCCRTTPADIAALKARTEG 362
+WQ AGA L+GGCCRTTP+ I A+ +G
Sbjct: 291 RWQEAGASLVGGCCRTTPSTIRAVSKVLKG 320
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 101 LGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCAXGGLSAAVA 280
+G+NC + ++ L T + VYPNSGE +D +K W C A+A
Sbjct: 232 VGVNCTPPQFIEGIIRELKKQTKKAIAVYPNSGEIWDGRAKRW--LPAQCFGHKSFDALA 289
Query: 281 GRWR 292
RW+
Sbjct: 290 KRWQ 293
>01_06_0875 -
32650150-32650350,32650464-32650788,32650872-32651092,
32651187-32651243,32651333-32651515
Length = 328
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/65 (36%), Positives = 33/65 (50%)
Frame = +2
Query: 98 ALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCAXGGLSAAV 277
A+G+NC A + + +T P+VVYPNSGE Y A +K W E A +
Sbjct: 218 AVGVNCTAPRLVHGLILSIRKVTSKPVVVYPNSGETYVAETKEW-VESEGGASETDFVSC 276
Query: 278 AGRWR 292
G+WR
Sbjct: 277 VGKWR 281
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +3
Query: 273 QWQAAGARLIGGCCRTTPADIAAL 344
+W+ AGA L+GGCCRT+PA + A+
Sbjct: 279 KWRQAGAALVGGCCRTSPATVRAI 302
>12_02_1048 +
25675563-25675760,25676995-25677051,25677132-25677331,
25677412-25677541,25677642-25677845,25678017-25678088,
25678379-25678546
Length = 342
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 98 ALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTW 229
A+GINC + + +T P+++YPNSGE YDA K W
Sbjct: 243 AVGINCTPPRFIHGLILSIRKVTDKPILIYPNSGERYDAEKKEW 286
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 264 YLPQWQAAGARLIGGCCRTTPADIAAL-KARTEGLSGLH 377
Y+ +W GA LIGGCCRTTP I A+ ++ + S LH
Sbjct: 300 YVNEWCKDGAVLIGGCCRTTPNTIKAISRSLNQRHSSLH 338
>10_08_0045 +
14407892-14408068,14408759-14408815,14408899-14409125,
14409271-14409400,14409848-14410051,14410127-14410198,
14410468-14410608
Length = 335
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 98 ALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTW 229
A+GINC + + +T P+++YPNSGE YD + K W
Sbjct: 245 AVGINCTPPRFIHELVLSIRKVTSKPILIYPNSGESYDPIRKEW 288
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 264 YLPQWQAAGARLIGGCCRTTPADIAALKARTEGL 365
Y+ +W AGA LIGGCCRT+P I + G+
Sbjct: 302 YVKKWHEAGASLIGGCCRTSPDTIRGISKALHGV 335
>05_05_0189 + 23106165-23106341,23106606-23107598,23107694-23109013
Length = 829
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 230 HHHGEHCAXGGLSAAVAGRWRTVDWRVLSHHACGYRRVKSAN*GFIGSTSFIVG 391
H+H H GG+ AAV R V+ +VL C N G +G +FI G
Sbjct: 567 HYHKRHMLAGGVRAAVG--LRVVNRKVLEVAPCSVAVFVDRNAGSVGLCAFIPG 618
>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
1162360-1162620,1162729-1162916,1164127-1164166
Length = 1162
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 110 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHY-DAVSKTWH 232
+C L + +++QHL L L + P HY + V K WH
Sbjct: 1109 SCTGLRSLPSSIQHLTSLQHLVISYNPTLSRHYKNRVGKDWH 1150
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 30.7 bits (66), Expect = 0.88
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 320 GATAPANQPCASGLPLRQIIRXARNVHRDDARFCSRHRNARPSSDTPPAAAPLN-RVNAA 144
GA++P+ PC S + L +R A H R S R PS+ PPAAAP V+
Sbjct: 588 GASSPSAVPCTSSVTLA--LR-ALTPHLRALRV-SVPRPRAPSASAPPAAAPREWTVSLT 643
Query: 143 TQRWCF 126
T R+ F
Sbjct: 644 TGRYSF 649
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -1
Query: 362 TLSSRF*RGDIRRRGATAPANQPCASGLPLRQIIRXARNVHRDDARFCSRH----RNARP 195
TLS R G ++P+ PC S +PL +H C+ H R P
Sbjct: 465 TLSPTTTRYSFGYSGVSSPSAVPCTSSVPLA--------LHVLAPHLCALHVSVPRPCAP 516
Query: 194 SSDTPPAAAP 165
S+ PPAAAP
Sbjct: 517 SASAPPAAAP 526
>03_05_0136 +
21158917-21159939,21160183-21160241,21160259-21160294,
21160345-21160387,21160582-21160698,21162090-21162179,
21162329-21162436,21162547-21162588
Length = 505
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 189 RTRASITMP*AKPGIITVNIARX-ADYLPQWQAAGARLIGGCCRTTPADIAALKARTEGL 365
RT + P P I N R QW + R G +TT A + LK +T+ L
Sbjct: 204 RTTTKLPKPPPSPLIARTNSTRLLGSSNTQWALSPGRRSGSPLKTTLATVPELKGKTKSL 263
Query: 366 SGL 374
GL
Sbjct: 264 IGL 266
>07_03_0124 - 13723597-13724657,13726179-13726413
Length = 431
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = +2
Query: 62 WLRCWRVIRRWLALGINCI-ALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHH 238
W++ +R WLAL + L T AALQ + LPLV P G DAV H
Sbjct: 13 WVQGFRCFP-WLALNFHLTRGLGLTPAALQLVQNAGNLPLVAKPLFGVLSDAVYVGRAHR 71
Query: 239 GEHCAXGGLSAAVAGRWRTV 298
+ + G L +A W T+
Sbjct: 72 LPYISIGALLQLMA--WGTL 89
>01_06_0617 - 30643177-30643506
Length = 109
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -1
Query: 215 RHRNARPSSDTPPAAAPLNRVNAATQRWCFPAQYS*CLAPATCG*PASNATTSRSG 48
R R R ++ AAA + + +RW P+ S +A A G P++ T R G
Sbjct: 51 RCRCRRKEAEVGEAAADVRKAATPRRRWGAPSSSSPHVAVAATGFPSTEHNTERGG 106
>05_05_0017 + 21546434-21546841
Length = 135
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -1
Query: 236 DDARFCSRHRNARPSSDTP-PAAAPLNRVNAATQRWCFPAQYS*CLAPATCG*PASNATT 60
D AR H A P+SD P P+ APL+ PA S T PA+ A T
Sbjct: 36 DWARQLRHHHGASPASDAPAPSPAPLSTPELCRPGEPVPAPSSSPAGATTTPAPAAPAAT 95
Query: 59 SRSGVP 42
+ + P
Sbjct: 96 APAPSP 101
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +3
Query: 300 IGGCCRTTPADIAAL-KARTEGLSGLHR 380
+G CC+T P I AL K R +G G+H+
Sbjct: 313 LGQCCKTRPDFIKALEKWRGQGFEGMHQ 340
>07_03_0329 +
16840051-16840917,16840999-16841342,16841444-16841574,
16841671-16841792,16841877-16841983,16842104-16842236,
16842342-16842458,16842560-16842667,16842716-16842742,
16842759-16842830,16843462-16843584,16843671-16843833,
16844140-16844264,16844355-16844489,16844574-16844677,
16844772-16844834,16844930-16844993,16845186-16845318,
16845414-16845487,16845603-16845697,16845799-16845830,
16846201-16846355
Length = 1097
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 100 RQPPADNPPATQPRHAAAYRR 38
+QPP D P A +PR AA Y R
Sbjct: 210 QQPPPDLPQAPEPRLAAQYAR 230
>03_05_0301 + 22928864-22929787
Length = 307
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 188 PNSGEHYDAVSKTWHHHGEH 247
P+SG +D VS+ HHH H
Sbjct: 269 PSSGHSHDEVSQQQHHHHHH 288
>11_04_0474 +
18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 493 CLFWRMRHNVLWFCRPG*GACAAXRQC 413
C+ +R +L FCR GAC R C
Sbjct: 338 CMIQLLRDPILMFCRSFEGACTRLRTC 364
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 407 NXALPXGGTSALSGPTKPQNVMPHPPEQTCRTXGF 511
N + P TS SGP PQ++ HP Q G+
Sbjct: 624 NQSQPSTSTSIASGPPLPQHLTLHPYAQATLPLGY 658
>03_05_0141 - 21210176-21212140
Length = 654
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 296 PCASGLPLRQIIRXARNVHRDDARFCSRHRNARPSSDTPPAAA 168
PCAS PL R +R+ +R SRHR + T PAAA
Sbjct: 14 PCASRDPLHAAPRRSRSP--STSRPPSRHRRTASARSTLPAAA 54
>02_05_0691 -
30949234-30949243,30949613-30950001,30950425-30950449,
30950594-30950688,30950842-30951359,30951652-30951736,
30951842-30952633
Length = 637
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -2
Query: 124 QRNTVNA*RQPPADNPPATQPRHAAAYRRS 35
+RN++ A R PP D P+ RH+++ R+
Sbjct: 307 RRNSLPASRSPPPDASPSVNKRHSSSSARN 336
>12_02_0130 + 14026460-14027017
Length = 185
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -3
Query: 198 PEFGYT--TSGSTVKPCKCCNAAVVFSSAIQLMPSASH 91
P F Y +SGS V C C AAV ++ +P+ H
Sbjct: 107 PAFEYRRGSSGSGVAQCAVCIAAVKDGDTVRRLPACGH 144
>01_05_0098 -
18088331-18088376,18088703-18088935,18089078-18089203,
18089387-18089494,18089646-18089709,18090256-18090409,
18090551-18090671,18091095-18091472
Length = 409
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +3
Query: 276 WQAAGARLIGGCCRTTPADIAALKARTEGL 365
W A + CCR PA++AA + E L
Sbjct: 291 WDALSSEAAAKCCRGLPAELAAKQVVKEAL 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,171,004
Number of Sequences: 37544
Number of extensions: 422233
Number of successful extensions: 1598
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1594
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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