Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0641.Seq
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31686| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)              30   1.2  
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)           29   2.1  
SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)                   29   2.7  
SB_25264| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_31686| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 125 ENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHG 241
           ++  + ++ L   T LP+V+YPN GE +  + + W   G
Sbjct: 76  DSEQSLIRRLKPKTTLPIVIYPNKGEEW--IDRRWQDTG 112


>SB_30772| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-09)
          Length = 207

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 284 GLPLRQIIRXARNVHRDDARFCSRHRNARPSS 189
           GLPL  +IR   +VH  +    +RHR   P S
Sbjct: 122 GLPLNSVIRRLVDVHSSEGMTSARHRKRHPVS 153


>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 89  RWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHY 208
           RW+   +  IA+ +T  ALQHL  L++  LV+  N   H+
Sbjct: 719 RWVKSDLTVIAVFSTKMALQHLLLLSLAALVIADNPVVHF 758


>SB_27648| Best HMM Match : Ribosomal_L18ae (HMM E-Value=2.8)
          Length = 796

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 239 RDDARFCSRHRNARPSSDTPPAAAPLNRVNAA 144
           R DAR C+R  +A  S+ TP A  P+   N+A
Sbjct: 457 RRDARACARAEDAARSAGTPSAHTPVPESNSA 488


>SB_55889| Best HMM Match : REJ (HMM E-Value=5.4e-07)
          Length = 2008

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -3

Query: 312  STRQSTVRQRPATAADNPPXAQCSP**CQVLLTAS*CSPEFGYTTSGSTVKPCKCCNA 139
            +T +  V     T AD PP A CS   C+  + AS   P       G T+ P    NA
Sbjct: 1417 TTGKEPVTSADGTKADVPPSAFCSTDPCEP-VAASIAKPSAALIPPGETIDPNMLTNA 1473


>SB_25264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2

Query: 182 VYPNSGEHYDAVSKTWHHHGEHCAXGGLSAAVAGRW 289
           V+ ++GE+  A   TW H G H + G         W
Sbjct: 173 VHGSTGEYMGAQGSTWEHRGIHGSTGEYMGVQGNTW 208



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 182 VYPNSGEHYDAVSKTWHHHGEHCAXGGLSAAVAGRW 289
           ++ ++GE+      TW H G H + G    A    W
Sbjct: 133 IHGSTGEYMGVQGNTWEHRGIHGSTGEYMGAQGNTW 168



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 182 VYPNSGEHYDAVSKTWHHHGEHCAXGGLSAAVAGRW 289
           ++ ++GE+  A   TW + G H + G    A    W
Sbjct: 153 IHGSTGEYMGAQGNTWEYRGVHGSTGEYMGAQGSTW 188


>SB_12328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = +1

Query: 127 KHHRCVAAFTRFNGAAAGGVSELGRALRCREQNLASSR*TLRAWRIICRSGRPLAH--G* 300
           K+HRC   F   +    G       A    + +L+SS   L+ +  + R+  P AH  G 
Sbjct: 268 KYHRCPRYFALLHHVGVGRYERHKHACILADSSLSSSVSDLQTFPPLSRAESPWAHPEGK 327

Query: 301 LAGAVAPRL 327
           LA   +P L
Sbjct: 328 LARVASPHL 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,633,353
Number of Sequences: 59808
Number of extensions: 418547
Number of successful extensions: 1283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)