Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0641.Seq
(578 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65011-1|AAC51160.1| 509|Homo sapiens preferentially expressed ... 31 2.9
CR456549-1|CAG30435.1| 509|Homo sapiens PRAME protein. 31 2.9
BC039731-1|AAH39731.1| 509|Homo sapiens preferentially expresse... 31 2.9
BC022008-1|AAH22008.1| 509|Homo sapiens preferentially expresse... 31 2.9
BC014074-1|AAH14074.1| 509|Homo sapiens preferentially expresse... 31 2.9
AY874862-1|AAX59898.1| 424|Homo sapiens SH3-binding kinase prot... 31 2.9
BC036762-1|AAH36762.1| 348|Homo sapiens hypothetical protein MG... 31 3.9
BC131808-1|AAI31809.1| 337|Homo sapiens LOC155036 protein protein. 30 6.8
AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein. 30 6.8
M13452-1|AAA36160.1| 515|Homo sapiens protein ( Human lamin A m... 29 9.0
BC014507-1|AAH14507.1| 664|Homo sapiens lamin A/C protein. 29 9.0
AY847595-1|AAW32538.1| 664|Homo sapiens lamin A/C transcript va... 29 9.0
AY357727-1|AAR29466.1| 614|Homo sapiens progerin protein. 29 9.0
AL135927-4|CAI15522.1| 664|Homo sapiens lamin A/C protein. 29 9.0
AL135927-3|CAI15523.1| 614|Homo sapiens lamin A/C protein. 29 9.0
>U65011-1|AAC51160.1| 509|Homo sapiens preferentially expressed
antigen of melanoma protein.
Length = 509
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 110 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWH 232
N I++ + LQHL GL+ L V+YP E Y+ + T H
Sbjct: 416 NSISISALQSLLQHLIGLSNLTHVLYPVPLESYEDIHGTLH 456
>CR456549-1|CAG30435.1| 509|Homo sapiens PRAME protein.
Length = 509
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 110 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWH 232
N I++ + LQHL GL+ L V+YP E Y+ + T H
Sbjct: 416 NSISISALQSLLQHLIGLSNLTHVLYPVPLESYEDIHGTLH 456
>BC039731-1|AAH39731.1| 509|Homo sapiens preferentially expressed
antigen in melanoma protein.
Length = 509
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 110 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWH 232
N I++ + LQHL GL+ L V+YP E Y+ + T H
Sbjct: 416 NSISISALQSLLQHLIGLSNLTHVLYPVPLESYEDIHGTLH 456
>BC022008-1|AAH22008.1| 509|Homo sapiens preferentially expressed
antigen in melanoma protein.
Length = 509
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 110 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWH 232
N I++ + LQHL GL+ L V+YP E Y+ + T H
Sbjct: 416 NSISISALQSLLQHLIGLSNLTHVLYPVPLESYEDIHGTLH 456
>BC014074-1|AAH14074.1| 509|Homo sapiens preferentially expressed
antigen in melanoma protein.
Length = 509
Score = 31.1 bits (67), Expect = 2.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 110 NCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWH 232
N I++ + LQHL GL+ L V+YP E Y+ + T H
Sbjct: 416 NSISISALQSLLQHLIGLSNLTHVLYPVPLESYEDIHGTLH 456
>AY874862-1|AAX59898.1| 424|Homo sapiens SH3-binding kinase
protein.
Length = 424
Score = 31.1 bits (67), Expect = 2.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 278 PLRQIIRXARNVHRDDARFCSRHRNARPSSDTPPAAAPL 162
P +++ R ++ + R HR +P D PPAA PL
Sbjct: 305 PAKEVFRFLKHELTSELRRRPSHRARKPPGDRPPAAGPL 343
>BC036762-1|AAH36762.1| 348|Homo sapiens hypothetical protein
MGC46336 protein.
Length = 348
Score = 30.7 bits (66), Expect = 3.9
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +2
Query: 428 GTSALSGPTKPQNVMPHPPEQTCRTXGFKIILLADVRL---QTRSLDPCNN 571
G S + Q V+PHP E+TCR + + LA + T L PC +
Sbjct: 151 GDSVNEKTSLSQRVLPHPGEKTCRGGSVESVSLAPSSVAPDSTSGLRPCGS 201
>BC131808-1|AAI31809.1| 337|Homo sapiens LOC155036 protein protein.
Length = 337
Score = 29.9 bits (64), Expect = 6.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 317 ATAPANQP--CASGLPLRQIIRXARNVHRDDARFCSRHRNARPSSDTPPAAAP 165
+TAPA + CA G PL R R D R + + A P + PP AP
Sbjct: 142 STAPATKTSRCAKGGPLSPRKDAGRAKDRKDPRKKKKGKEAGPGAGLPPPRAP 194
>AB058759-1|BAB47485.1| 1134|Homo sapiens KIAA1856 protein protein.
Length = 1134
Score = 29.9 bits (64), Expect = 6.8
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 317 ATAPANQP--CASGLPLRQIIRXARNVHRDDARFCSRHRNARPSSDTPPAAAP 165
+TAPA + CA G PL R R D R + + A P + PP AP
Sbjct: 894 STAPATKTSRCAKGGPLSPRKDAGRAKDRKDPRKKKKGKEAGPGAGLPPPRAP 946
>M13452-1|AAA36160.1| 515|Homo sapiens protein ( Human lamin A
mRNA, 3'end. ).
Length = 515
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 74 WRVIRRWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCA 253
W+ W AL N+T + L VV + E D + HHHG HC+
Sbjct: 365 WKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLH--HHHGSHCS 422
Query: 254 XGGLSAAVAGRWRTV 298
G A R RTV
Sbjct: 423 SSGDPAEYNLRSRTV 437
>BC014507-1|AAH14507.1| 664|Homo sapiens lamin A/C protein.
Length = 664
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 74 WRVIRRWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCA 253
W+ W AL N+T + L VV + E D + HHHG HC+
Sbjct: 514 WKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLH--HHHGSHCS 571
Query: 254 XGGLSAAVAGRWRTV 298
G A R RTV
Sbjct: 572 SSGDPAEYNLRSRTV 586
>AY847595-1|AAW32538.1| 664|Homo sapiens lamin A/C transcript
variant 1 protein.
Length = 664
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 74 WRVIRRWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCA 253
W+ W AL N+T + L VV + E D + HHHG HC+
Sbjct: 514 WKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLH--HHHGSHCS 571
Query: 254 XGGLSAAVAGRWRTV 298
G A R RTV
Sbjct: 572 SSGDPAEYNLRSRTV 586
>AY357727-1|AAR29466.1| 614|Homo sapiens progerin protein.
Length = 614
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 74 WRVIRRWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCA 253
W+ W AL N+T + L VV + E D + HHHG HC+
Sbjct: 514 WKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLH--HHHGSHCS 571
Query: 254 XGGLSAAVAGRWRTV 298
G A R RTV
Sbjct: 572 SSGDPAEYNLRSRTV 586
>AL135927-4|CAI15522.1| 664|Homo sapiens lamin A/C protein.
Length = 664
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 74 WRVIRRWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCA 253
W+ W AL N+T + L VV + E D + HHHG HC+
Sbjct: 514 WKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLH--HHHGSHCS 571
Query: 254 XGGLSAAVAGRWRTV 298
G A R RTV
Sbjct: 572 SSGDPAEYNLRSRTV 586
>AL135927-3|CAI15523.1| 614|Homo sapiens lamin A/C protein.
Length = 614
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/75 (30%), Positives = 29/75 (38%)
Frame = +2
Query: 74 WRVIRRWLALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCA 253
W+ W AL N+T + L VV + E D + HHHG HC+
Sbjct: 514 WKAQNTWGCGNSLRTALINSTGEEVAMRKLVRSVTVVEDDEDEDGDDLLH--HHHGSHCS 571
Query: 254 XGGLSAAVAGRWRTV 298
G A R RTV
Sbjct: 572 SSGDPAEYNLRSRTV 586
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,230,585
Number of Sequences: 237096
Number of extensions: 1968457
Number of successful extensions: 5639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5637
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5985693436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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