Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0641.Seq
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical ...    33   0.11 
Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical pr...    31   0.45 
AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical ...    31   0.59 
Z70781-4|CAA94834.1|  385|Caenorhabditis elegans Hypothetical pr...    31   0.78 
AL034393-13|CAA22317.1|  340|Caenorhabditis elegans Hypothetical...    27   7.3  
Z82260-8|CAB05136.1|  361|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z82260-7|CAB05135.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF016442-8|AAB65916.1|  881|Caenorhabditis elegans Hypothetical
           protein K12B6.1 protein.
          Length = 881

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 198 PEFGYTTSGSTVKPCKCCNAAVVFSSAIQLMPSASHLRITRQQ 70
           P   +  +G+ +KP K  N  VVF + +QL+    HL  T +Q
Sbjct: 475 PATDFMPAGTFIKPTKLTNWEVVFDNGVQLVDCIQHLTSTMRQ 517


>Z46828-6|CAA86855.1| 1249|Caenorhabditis elegans Hypothetical
           protein R03D7.1 protein.
          Length = 1249

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 258 ADYLPQWQAAG-ARLIGGCCRTTPADIAALKARTEGLS 368
           AD L ++   G   +IGGCC TTP  I A+    +G++
Sbjct: 294 ADVLREFARDGLVNIIGGCCGTTPDHINAMYKAVQGIT 331


>AC006685-2|AAK84573.1|  334|Caenorhabditis elegans Hypothetical
           protein T13G4.4 protein.
          Length = 334

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 95  LALGINCIALENTTAALQHLHGLTVLPLVVYPNSGE 202
           L +GINC    N   AL  L       + VYPN G+
Sbjct: 276 LGIGINCTDPNNVLPALNELQPFAFSEVFVYPNKGD 311


>Z70781-4|CAA94834.1|  385|Caenorhabditis elegans Hypothetical
           protein F57A8.6 protein.
          Length = 385

 Score = 30.7 bits (66), Expect = 0.78
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -1

Query: 242 HRDDARFCSRHRNARPSSDTPPAAAPLNRVNAATQRWCFPAQYS*C 105
           +RD + FCS   +  PS           R N   QRWC P     C
Sbjct: 192 YRDTSNFCSEGMSVLPSQRCDTLDDCNMRTNQTAQRWCDPVSKYCC 237


>AL034393-13|CAA22317.1|  340|Caenorhabditis elegans Hypothetical
           protein Y18D10A.17 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -1

Query: 101 APATCG*PASNATTSRSGVPS 39
           APA+ G PA++A +SR+G PS
Sbjct: 104 APASDGAPAASAGSSRAGTPS 124


>Z82260-8|CAB05136.1|  361|Caenorhabditis elegans Hypothetical
           protein C32H11.10 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 365 IGSTSFIVGLISAXNXALPXGGTSALSGPTKPQNVMPHP 481
           I ST+FI+  ++    +    GT+ +  P+ P N   +P
Sbjct: 2   IRSTAFILAFLAVSVASFNCNGTTTIEAPSAPSNTTFYP 40


>Z82260-7|CAB05135.1|  369|Caenorhabditis elegans Hypothetical
           protein C32H11.9 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 365 IGSTSFIVGLISAXNXALPXGGTSALSGPTKPQNVMPHP 481
           I ST+FI+  ++    +    GT+ +  P+ P N   +P
Sbjct: 10  IRSTAFILAFLAVSVASFNCNGTTTIEAPSAPSNTTFYP 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,716,308
Number of Sequences: 27780
Number of extensions: 289602
Number of successful extensions: 890
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)