Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0641.Seq
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.7  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.7  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.7  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   8.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 79   PPATQPRHAAAYRRSG 32
            PP   P +A+A+ RSG
Sbjct: 1761 PPVGHPTNASAHSRSG 1776


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 339 RRYPQAWCDSTRQSTVRQR 283
           R+Y + W + +R  T R+R
Sbjct: 57  RKYRETWKERSRDRTERER 75


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 339 RRYPQAWCDSTRQSTVRQR 283
           R+Y + W + +R  T R+R
Sbjct: 57  RKYRETWKERSRDRTERER 75


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 339 RRYPQAWCDSTRQSTVRQR 283
           R+Y + W + +R  T R+R
Sbjct: 57  RKYRETWKERSRDRTERER 75


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 339 RRYPQAWCDSTRQSTVRQR 283
           R+Y + W + +R  T R+R
Sbjct: 57  RKYRETWKERSRDRTERER 75


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 49  AYRRSGGXCRAG 14
           A RR GG CR G
Sbjct: 87  AQRRKGGSCRNG 98


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 399 LIRPTMNDVDPINPQFAL 346
           LIRP MN+ + +  Q  L
Sbjct: 48  LIRPVMNNTETLTVQLGL 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,950
Number of Sequences: 438
Number of extensions: 3789
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)