Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0637.Seq
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   2.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   2.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   7.6  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 519 LHMNSIKLFKQVKDCFVFTSLFWLSVI 599
           +H N +   ++V D F    L W+S+I
Sbjct: 223 MHSNLVTTSEEVCDSFSIFGLVWISLI 249


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 519 LHMNSIKLFKQVKDCFVFTSLFWLSVI 599
           +H N +   ++V D F    L W+S+I
Sbjct: 223 MHSNLVTTSEEVCDSFSIFGLVWISLI 249


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 759 PPGVFPXSRPL 727
           PPGVFP   P+
Sbjct: 187 PPGVFPVDAPM 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,773
Number of Sequences: 336
Number of extensions: 4555
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)