Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0637.Seq
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   105   1e-23
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   3.7  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   4.8  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  105 bits (251), Expect = 1e-23
 Identities = 47/73 (64%), Positives = 58/73 (79%)
 Frame = +2

Query: 32  MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQF 211
           M+ Q+K++ SFEKRK E ++IR KYPDR+PVI EK  K  +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 212 YFLIRKRIHLRPE 250
            ++IRKRI L PE
Sbjct: 61  VYVIRKRIKLSPE 73



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 21/46 (45%), Positives = 33/46 (71%)
 Frame = +1

Query: 250 RRLFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 387
           + +F F++ ++PPT+A M ++Y+EH  ED FLYI +S EN +G  F
Sbjct: 74  KAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 333 RFLSIHSIFRRKCLWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIY 512
           RF SI S+      + +  NY L N F+ +    + ++ +   +  I W   +IN+ +I 
Sbjct: 58  RFFSILSLVSCLAYFTMACNYGLKNVFSSASFFREVSVRMVYYVRYIQW---LINFPLII 114

Query: 513 ICLH 524
           + LH
Sbjct: 115 VMLH 118


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 23  NINMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEK 136
           NIN+   YK E    +R  E    ++KYP  +   + K
Sbjct: 154 NININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISK 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,518,681
Number of Sequences: 5004
Number of extensions: 73804
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)