Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0637.Seq
(907 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1208 - 31750493-31750587,31750733-31750851,31751425-317514... 98 7e-21
07_03_0566 - 19572410-19572504,19572590-19572708,19573109-195731... 97 2e-20
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 57 2e-08
11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834 49 4e-06
02_04_0068 - 19442643-19442734,19442824-19442885,19443013-194430... 49 4e-06
03_05_0384 - 23671097-23671201,23671343-23671429,23671542-236716... 35 0.10
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 29 3.8
01_06_0828 - 32263312-32263386,32263477-32263563,32263659-322637... 29 3.8
10_06_0154 - 11291630-11292106,11292192-11292457,11293027-112931... 29 5.1
>04_04_1208 -
31750493-31750587,31750733-31750851,31751425-31751477,
31751567-31751622,31752690-31752726
Length = 119
Score = 98.3 bits (234), Expect = 7e-21
Identities = 43/72 (59%), Positives = 57/72 (79%)
Frame = +2
Query: 35 KFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFY 214
K +K +H+ E+R+AE +IR KY DR+PVIVEKA + + D+DKKKYLVP+DLTVGQF
Sbjct: 3 KSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFV 62
Query: 215 FLIRKRIHLRPE 250
+++RKRI L PE
Sbjct: 63 YVVRKRIKLSPE 74
Score = 56.4 bits (130), Expect = 3e-08
Identities = 21/43 (48%), Positives = 32/43 (74%)
Frame = +1
Query: 250 RRLFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 378
+ +F FV N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 75 KAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>07_03_0566 -
19572410-19572504,19572590-19572708,19573109-19573161,
19573251-19573306,19574297-19574340,19576767-19576816,
19577393-19577398,19577675-19578103
Length = 283
Score = 97.1 bits (231), Expect = 2e-20
Identities = 43/69 (62%), Positives = 55/69 (79%)
Frame = +2
Query: 44 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLI 223
+K EH E+R+AE +IR KY DR+PVIVEKA K + ++DKKKYLVP+DLTVGQF +++
Sbjct: 170 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVV 229
Query: 224 RKRIHLRPE 250
RKRI L PE
Sbjct: 230 RKRIKLSPE 238
Score = 55.2 bits (127), Expect = 7e-08
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +1
Query: 250 RRLFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 381
+ +F FV N +PPT++ M ++Y+E+ DED FLY+ +S EN +G+
Sbjct: 239 KAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGS 282
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 56.8 bits (131), Expect = 2e-08
Identities = 22/46 (47%), Positives = 34/46 (73%)
Frame = +1
Query: 241 AA*RRLFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 378
+A + +F FV N +PPT+A M ++Y+E+ DED FLY+ +S EN +G
Sbjct: 1907 SAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 1952
Score = 54.4 bits (125), Expect = 1e-07
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +2
Query: 65 EKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKK 175
E+R+AE +IR KYPDR+PVIVEKA + + D+DKKK
Sbjct: 1806 ERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKK 1842
Score = 41.1 bits (92), Expect = 0.001
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = +2
Query: 173 KYLVPSDLTVGQFYFLIRKRIHLRPE 250
+YLVP+DLTVGQF +++RKRI L E
Sbjct: 1884 RYLVPADLTVGQFVYVVRKRIKLSAE 1909
>11_01_0001 - 336-427,515-576,704-756,974-1249,1496-1834
Length = 273
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 LFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 378
LF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 232 LFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 273
>02_04_0068 -
19442643-19442734,19442824-19442885,19443013-19443067,
19443290-19443344
Length = 87
Score = 49.2 bits (112), Expect = 4e-06
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = +1
Query: 256 LFFFVNNVIPPTSATMGSLYQEHHDE-DFFLYIAFSDENVYG 378
LF FVNN +P T+ MGS+Y+ + DE D FLY+ +S E +G
Sbjct: 46 LFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
>03_05_0384 -
23671097-23671201,23671343-23671429,23671542-23671660,
23671839-23672077,23672473-23672529,23672634-23672720,
23673147-23673688,23676494-23676691
Length = 477
Score = 34.7 bits (76), Expect = 0.10
Identities = 27/104 (25%), Positives = 43/104 (41%)
Frame = +3
Query: 432 VKFNLSLRLKLCIILWYFFIINWHIIYICLHMNSIKLFKQVKDCFVFTSLFWLSVITGCN 611
VK +L+ + LC+ LWY+ + +I + L + KL V + L+ L V G N
Sbjct: 236 VKLSLASAIMLCLELWYYTAV---LILVGL-LKDAKLQVDVMSVCINYQLWTLMVALGFN 291
Query: 612 KKIXKR*KXXXKKKPPGGARYPIRPIVSRYYIPWAVVLPTVVTW 743
+ R P A++ + VS I AV + W
Sbjct: 292 AAVSVRVSNELGANRPKAAKFAVAMAVSTSAIVGAVFMAVFFIW 335
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 47 KEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLV 184
KEE + EK++ KI++ P R EK P G K+ ++V
Sbjct: 654 KEEPTSEKKQPVSAKIKKTVPKRTSGTKEKKPDTDQGGKRKRNWMV 699
>01_06_0828 -
32263312-32263386,32263477-32263563,32263659-32263777,
32263886-32264124,32264219-32264275,32264370-32264456,
32264545-32265086,32265157-32265405
Length = 484
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/91 (25%), Positives = 40/91 (43%)
Frame = +3
Query: 408 SFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIYICLHMNSIKLFKQVKDCFVFTSLFW 587
+FT VK +LS + LC+ +WY+ + I+ CL I++ + C + L+
Sbjct: 245 AFTSLGGFVKLSLSSAVMLCLEMWYYTAV--LILVGCLKNPEIQV-GAISICMNY-QLWT 300
Query: 588 LSVITGCNKKIXKR*KXXXKKKPPGGARYPI 680
L V G N + R P A++ +
Sbjct: 301 LMVAVGFNAAVSVRVANELGANHPKAAKFSV 331
>10_06_0154 -
11291630-11292106,11292192-11292457,11293027-11293131,
11293210-11293234,11293349-11293465,11293528-11294041,
11295524-11295578,11295980-11296060,11296129-11296219,
11296321-11296417,11297465-11297529,11297950-11298108,
11298208-11298455,11300667-11300835
Length = 822
Score = 29.1 bits (62), Expect = 5.1
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = +2
Query: 26 INMKFQYKEEHSFEKRKAEGEKIRRKYPDRV----PVIVEKAPKVALGDLDKKKYLVPSD 193
I M+ + KEE S +K G+K +R++ ++ + + K KV + K L+ S
Sbjct: 681 IAMRERDKEEVSIVDKKCIGKKKKRRFRKKMRMKEHIFLTKIKKVIESHIMDGKVLIASF 740
Query: 194 LTVGQFYFLIRKRIHLRPEDD 256
++ L+ +I+ PE+D
Sbjct: 741 RVTTGYFRLLPHQIYKIPEED 761
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,124,324
Number of Sequences: 37544
Number of extensions: 503290
Number of successful extensions: 1153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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