Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0637.Seq
(907 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 146 2e-35
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0) 60 3e-09
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4) 31 1.3
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8) 29 3.9
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40) 29 5.2
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54) 29 6.8
SB_49287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 28 9.0
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1) 28 9.0
SB_34260| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16) 28 9.0
SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 28 9.0
SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56) 28 9.0
SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003) 28 9.0
SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9) 28 9.0
>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 119
Score = 146 bits (355), Expect = 2e-35
Identities = 66/74 (89%), Positives = 71/74 (95%)
Frame = +2
Query: 32 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQF 211
MK++YKEEH FEKR+AEGEKIR+KYPDRVPVIVEKAPK +GDLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60
Query: 212 YFLIRKRIHLRPED 253
YFLIRKRIHLRPED
Sbjct: 61 YFLIRKRIHLRPED 74
Score = 87.0 bits (206), Expect = 2e-17
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +1
Query: 256 LFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 378
LFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 76 LFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
Length = 140
Score = 59.7 bits (138), Expect = 3e-09
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVA-LGDLDKKKYLVPSDLTVGQFYFL 220
+K+ SF R+ E IR K+P ++PVIVE+ K L LDK K+LVP +LT+ QF +
Sbjct: 14 FKQRKSFVSRRDEVAGIRAKFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTI 73
Query: 221 IRKRIHLRPEDDF 259
IR R+ L F
Sbjct: 74 IRNRMSLSSTQAF 86
Score = 37.5 bits (83), Expect = 0.015
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 259 FFFVNNV-IPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 381
+ VNN + S TM LY+E DED FLY+ ++ + ++G+
Sbjct: 87 YLIVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128
>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 33.9 bits (74), Expect = 0.18
Identities = 20/40 (50%), Positives = 23/40 (57%)
Frame = -3
Query: 794 GMCXPRPI*VGNPRGFSPXHDRW*NDGPGNVIPTHYRANW 675
GMC + I +GN +GF P HD P N THYRANW
Sbjct: 23 GMCC-KAIKLGNAKGF-PSHDVV-KRRPVNCNTTHYRANW 59
>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
Length = 736
Score = 31.1 bits (67), Expect = 1.3
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 294 CNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNS----FTLSDHMVKFNLSLRLK 461
C N SLP P + + ++ +++C +Y L + F+ SD + L L
Sbjct: 383 CGNRGSLPPPPPGQLAKLLAVRQKQCEKYPTSHYMLKVAHLQYFSYSDSKINSKLKLNYV 442
Query: 462 LCIILWYFFIINWHIIYI 515
LC+ W + H++YI
Sbjct: 443 LCLNTWLSDQFDKHMVYI 460
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 570 FTSLFWLSVITGCNKKIXKR*KXXXKKKPPGGARYPIRPIVSRYYIPWAVVLPTVVTWGK 749
F L LS G N + + + ++P GGARY + + R V++ V++GK
Sbjct: 1360 FVKLNSLSREMGANIVVTPKDQAYRYRRPRGGARYQLLFPLVRVNFELGVIMVIAVSFGK 1419
Query: 750 P-PGVTHLNRP 779
P +NRP
Sbjct: 1420 PVVPAALMNRP 1430
>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 110 DRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
+RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 81 ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPRRPIISS 133
>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
Length = 142
Score = 29.5 bits (63), Expect = 3.9
Identities = 22/46 (47%), Positives = 22/46 (47%)
Frame = +3
Query: 660 GGARYPIRPIVSRYYIPWAVVLPTVVTWGKPPGVTHLNRPWXAHXP 797
GGA PIRPIVSR I W GK T LNR AH P
Sbjct: 36 GGA--PIRPIVSRITIHWPAFYNAPT--GKTLAYTQLNR-LAAHPP 76
>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 643
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = -2
Query: 411 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLVERPHCCRCGWNDIVHEEEKS 253
N L+ NN +L + +F G C+V K + IM FLV C R + + +++K+
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDKA 636
>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
Length = 768
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -3
Query: 794 GMCXPRPI*VGNPRGFSPXHDRW*NDGPGNVIPTHYRANW 675
GMC + I +GN F P HD P N THYRANW
Sbjct: 17 GMCC-KAIKLGNASVF-PSHDVV-KRRPVNCNTTHYRANW 53
>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1455
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 244
RV + + + + D K YL P D G+FY L +IH+R
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIR 255
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.1 bits (62), Expect = 5.2
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -3
Query: 794 GMCXPRPI*VGNPRGFSPXHDRW*NDGPGNVIPTHYRANW 675
GMC + I +GN F P HD P N THYRANW
Sbjct: 31 GMCC-KAIKLGNASVF-PSHDVV-KRRPVNCNTTHYRANW 67
>SB_22013| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.54)
Length = 341
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = +3
Query: 432 VKFNLSLRLKLCIILWYFFIINWHIIYICLHMNSIKLFKQVKDCFVFTSLFWLSVIT 602
V F + L L +C I Y + + ++ +CL ++ + ++F L W ++ T
Sbjct: 36 VSFEVHLGLTICFISIYTLLFFFILVQLCLILHYKHRRLSYQSLYLFVCLLWAAIRT 92
>SB_49287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 28.7 bits (61), Expect = 6.8
Identities = 20/33 (60%), Positives = 20/33 (60%)
Frame = +3
Query: 699 YYIPWAVVLPTVVTWGKPPGVTHLNRPWXAHXP 797
YY AVV VVT GK PGVT LNR AH P
Sbjct: 4 YYNSLAVVY-NVVT-GKTPGVTQLNR-LAAHPP 33
>SB_55747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 158 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 209
>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 640
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 77 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 128
>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
Length = 417
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 34 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 85
>SB_34260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 28.3 bits (60), Expect = 9.0
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +3
Query: 351 SIFRRKCLWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFI----IN-WHIIYI 515
+I R C+ L+P+++ S+S + F+ S II W FFI +N +I++I
Sbjct: 10 AIIRAPCVRGLVPSFARSHSLVQN----VFSSS------IISWSFFIGVFDLNLMNIVWI 59
Query: 516 CLHMNSIKLFKQVKDCFVF 572
C M+S + K+ FVF
Sbjct: 60 CFWMDSAPVRLDRKNVFVF 78
>SB_397| Best HMM Match : MFS_1 (HMM E-Value=0.16)
Length = 394
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 324 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 375
>SB_47833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 232 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 283
>SB_39196| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 201
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 131 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 182
>SB_29369| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
Length = 785
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 450 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 501
>SB_12440| Best HMM Match : 7tm_1 (HMM E-Value=0.0003)
Length = 252
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/60 (21%), Positives = 30/60 (50%)
Frame = +3
Query: 396 SLSNSFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIYICLHMNSIKLFKQVKDCFVFT 575
+L+N F + V + L++ +I W F+ +W + I + + ++KL + ++ T
Sbjct: 90 NLTNDFRRQANQVPKSKIKVLRMLVIQWLVFVASWLPLLITMAVQALKLVDFSESLYIAT 149
>SB_413| Best HMM Match : Phage_GP20 (HMM E-Value=3.9)
Length = 179
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 113 RVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDDFSSS 268
RV + + + + D K YL P D G+FY L + H P SS
Sbjct: 109 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNPGRPIISS 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,188,384
Number of Sequences: 59808
Number of extensions: 565553
Number of successful extensions: 2679
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2672
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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