Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0637.Seq
(907 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap a... 136 2e-32
AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A recept... 136 2e-32
Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical pr... 58 9e-09
U00065-2|AAL27237.1| 672|Caenorhabditis elegans Prion-like-(q/n... 29 4.6
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 29 6.0
U80455-4|AAY55873.2| 315|Caenorhabditis elegans Hypothetical pr... 29 6.0
U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical pr... 28 8.0
>U23511-11|AAC46797.1| 123|Caenorhabditis elegans Lc3, gabarap and
gate-16 familyprotein 1 protein.
Length = 123
Score = 136 bits (330), Expect = 2e-32
Identities = 63/74 (85%), Positives = 69/74 (93%)
Frame = +2
Query: 32 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQF 211
MK+ YKEE++FEKR+AEG+KIRRKYPDR+PVIVEKAPK L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 212 YFLIRKRIHLRPED 253
YFLIRKRI LRPED
Sbjct: 61 YFLIRKRIQLRPED 74
Score = 76.6 bits (180), Expect = 2e-14
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 256 LFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 378
LFFFVNNVIP T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 76 LFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>AF326943-1|AAG49393.1| 123|Caenorhabditis elegans GABA A
receptor-associated protein protein.
Length = 123
Score = 136 bits (330), Expect = 2e-32
Identities = 63/74 (85%), Positives = 69/74 (93%)
Frame = +2
Query: 32 MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKVALGDLDKKKYLVPSDLTVGQF 211
MK+ YKEE++FEKR+AEG+KIRRKYPDR+PVIVEKAPK L DLDKKKYLVPSDLTVGQF
Sbjct: 1 MKWAYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQF 60
Query: 212 YFLIRKRIHLRPED 253
YFLIRKRI LRPED
Sbjct: 61 YFLIRKRIQLRPED 74
Score = 76.6 bits (180), Expect = 2e-14
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +1
Query: 256 LFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 378
LFFFVNNVIP T TMG LYQ+HH+ED FLYIA+SDE+VYG
Sbjct: 76 LFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYG 116
>Z69385-5|CAA93421.1| 130|Caenorhabditis elegans Hypothetical
protein ZK593.6 protein.
Length = 130
Score = 58.0 bits (134), Expect = 9e-09
Identities = 26/73 (35%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Frame = +2
Query: 44 YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAP-KVALGDLDKKKYLVPSDLTVGQFYFL 220
+KE F +R+ + E+IR + P++VPVI+E+ + +L +D+ K+LVP +TV + +
Sbjct: 17 FKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSI 76
Query: 221 IRKRIHLRPEDDF 259
+R+R+ L P+ F
Sbjct: 77 VRRRLQLHPQQAF 89
Score = 28.3 bits (60), Expect = 8.0
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 259 FFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 378
F VN + S +M +LY + D D F+Y+ ++ + +G
Sbjct: 90 FLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
>U00065-2|AAL27237.1| 672|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 25
protein.
Length = 672
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 222 SGNVFTCGLKTTFLLREQCHSTHICNNGVSLPRT 323
SG V TC T QC S + CNNG P T
Sbjct: 120 SGQVVTCSTNT------QCASGYTCNNGACCPNT 147
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 104 ISCGFFRPQPFSSQMNVLLCIGISC*YFITHCNF 3
I G P SS MN+LL +S F HC +
Sbjct: 353 IENGIISPSNSSSSMNLLLIFAVSTLIFSAHCQY 386
>U80455-4|AAY55873.2| 315|Caenorhabditis elegans Hypothetical
protein T01D1.7 protein.
Length = 315
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 477 WYFFIINWHIIYICLHMNSIKLFKQVKDCFVFTSLFWLSVITGC 608
W F I +Y+CL+++ I + V+ +S F+L +TGC
Sbjct: 4 WNQFPIWQTTLYMCLNIHHILVLITVRRFMKGSSFFFLFFVTGC 47
>U00065-1|AAK68287.1| 400|Caenorhabditis elegans Hypothetical
protein D1044.7 protein.
Length = 400
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 213 TS*SGNVFTCGLKTTFLLREQCHSTHICNNGVSLPRT 323
T+ S V G T QC S +IC+NG P T
Sbjct: 78 TNSSPQVSASGQVVTCFTNSQCASGYICSNGACCPNT 114
>Z81064-1|CAB02962.2| 655|Caenorhabditis elegans Hypothetical
protein F16B12.1 protein.
Length = 655
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = -3
Query: 113 DLDISCGFFRPQPFSSQMNVL-LCIGISC*YFITHCNF 3
D D SC FF + FSS+ +L L C Y H F
Sbjct: 364 DPDCSCNFFNDKTFSSEGKMLNLSFPAHCAYIYCHFQF 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,776,041
Number of Sequences: 27780
Number of extensions: 446113
Number of successful extensions: 1269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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