Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0637.Seq
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 116 VPVIVEKAPKVALGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR---PEDDFSS 265
           VP  V    KV     D+ +  VP D   G++  L    +H+R   PED + +
Sbjct: 126 VPSFVADFVKVLSWHTDQGEEFVPGDDYDGKYLVLPSGELHIRDVGPEDGYKT 178


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 690 VSRYYIPWAVVLPTVVTW 743
           VSR++ P++ ++  VV W
Sbjct: 362 VSRFFFPFSFLILNVVYW 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,976
Number of Sequences: 438
Number of extensions: 5369
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)