Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0633.Seq
         (588 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7SXM4 Cluster: Predicted protein; n=1; Nematostella ve...    40   0.057

>UniRef50_A7SXM4 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 244

 Score = 39.5 bits (88), Expect = 0.057
 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRARLNENDPT 16
           HG DTD     HG  TD  RTPHG  TD TR R   +  T
Sbjct: 45  HGHDTDPTRTRHGPHTDTTRTPHGHDTDTTRTRHGHDTDT 84



 Score = 37.1 bits (82), Expect = 0.30
 Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRARLNENDPTPPR 7
           HG DTD     HG  TD  RTPHG  TD T+    +   TP R
Sbjct: 67  HGHDTDTTRTRHGHDTDTTRTPHGHDTDPTQTH-TKTTRTPHR 108



 Score = 33.5 bits (73), Expect = 3.7
 Identities = 14/22 (63%), Positives = 14/22 (63%)
 Frame = -1

Query: 102 HGRXTDVRRTPHGLGTDATRAR 37
           HG  TD  RTPHG  TD TR R
Sbjct: 34  HGPHTDTTRTPHGHDTDPTRTR 55



 Score = 33.5 bits (73), Expect = 3.7
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 123 HGRDTDAHGRXTDVRRTPHGLGTDATRARLN-ENDPT 16
           HG DTD H   TD  +T HG  TD T+       DPT
Sbjct: 118 HGHDTDPHRPHTDPTQTQHGPHTDPTQTPHGPHTDPT 154



 Score = 33.1 bits (72), Expect = 4.9
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 123 HGRDTDAHGRXTDVRRTPHGLGTDATRA-RLNENDPTPP 10
           HG DTD     T   RTPH   TD TR    ++ DP  P
Sbjct: 89  HGHDTDPTQTHTKTTRTPHRPNTDTTRTPHGHDTDPHRP 127



 Score = 32.7 bits (71), Expect = 6.5
 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRA-RLNENDPTPPR 7
           HG DTD     HG  T   RT HG  TD TR    ++ DPT  R
Sbjct: 12  HGHDTDPTGTRHGPHTGPTRTRHGPHTDTTRTPHGHDTDPTRTR 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 387,533,355
Number of Sequences: 1657284
Number of extensions: 5027816
Number of successful extensions: 10930
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 10682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10918
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)