Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0633.Seq
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10665| Best HMM Match : PT (HMM E-Value=6.2)                        40   0.002
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              35   0.057
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)                 31   0.92 
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
          Length = 215

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 20/40 (50%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRARLNENDPT 16
           HG DTD     HG  TD  RTPHG  TD TR R   +  T
Sbjct: 52  HGHDTDPTRTRHGPHTDTTRTPHGHDTDTTRTRHGHDTDT 91



 Score = 37.5 bits (83), Expect = 0.008
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRARL-NENDPT 16
           HG DTD     HG  TD  RTPHG  TD T+ +  ++ +PT
Sbjct: 74  HGHDTDTTRTRHGHDTDTTRTPHGHDTDPTQTQHGHDTNPT 114



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 18/33 (54%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRAR 37
           HG  TD     HG  TD  RTPHG  TD TR R
Sbjct: 30  HGPHTDPTRTRHGPHTDTTRTPHGHDTDPTRTR 62



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 102 HGRXTDVRRTPHGLGTDATRARLN-ENDPTPPR 7
           HG  TD  +TPHG  TD TR R     DPT  R
Sbjct: 8   HGPHTDPTQTPHGHDTDPTRTRHGPHTDPTRTR 40



 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRARLNEN-DPT 16
           HG DT+     HG  T+  +TPHG  TD T      N DPT
Sbjct: 107 HGHDTNPTQTQHGPHTNPTQTPHGPHTDPTWTPHRPNTDPT 147



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 123 HGRDTDA----HGRXTDVRRTPHGLGTDATRAR 37
           HG DTD     HG  TD  +T HG  T+ T+ +
Sbjct: 85  HGHDTDTTRTPHGHDTDPTQTQHGHDTNPTQTQ 117


>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 147 FHSRMAHAHGRDTDAHGRXTDVRRTPHGLGTDATRARLNENDPTPP 10
           FHSR  HAH  +T   G   D  + P+  G    RA L +    PP
Sbjct: 147 FHSRTGHAHKWNTVNTGHPRDFHKCPYHRGVRIKRAALKDERTHPP 192


>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
          Length = 242

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
 Frame = -1

Query: 123 HGRDTDAH--------GRXTDVRRTPHGLGTDATRAR 37
           HG DTD H        G  TD  +T HG  TD TR R
Sbjct: 90  HGHDTDPHTDTTQTPHGHDTDPTQTQHGHDTDPTRTR 126


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 114  DTDAHGRXTDVRRTPHGLGTDATRARLNENDPTP 13
            D DA+G      R+    GTD  +A+ N + P P
Sbjct: 1077 DKDAYGTWKSSSRSQPNTGTDEPKAQCNSSRPQP 1110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,652
Number of Sequences: 59808
Number of extensions: 172891
Number of successful extensions: 417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)