Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0633.Seq
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24480.1 68417.m03509 serine/threonine protein kinase, putati...    27   7.0  

>At4g24480.1 68417.m03509 serine/threonine protein kinase, putative
           similar to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 963

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 29  SFNRARVASVPSPCGV-RLTSVSRPCASVSRPC 124
           S N      +PSP  +  LT  SRPC   + PC
Sbjct: 492 SINGETQCQIPSPLQMSHLTDFSRPCVHSTSPC 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,365,939
Number of Sequences: 28952
Number of extensions: 110483
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)