Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0632.Seq
         (387 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.20 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   1.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   1.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   1.8  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   1.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   7.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   7.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    20   7.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    20   9.8  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    20   9.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 248  SPLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 373
            SPL  PR P   H  +     A   S + +G  R     +KP
Sbjct: 914  SPLTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRKP 955


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 111 SSLKNHYFHCFITYSVGRK 167
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 186 YYRPRTASAQPSK 148
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 336 ALFFDRCTAPVKLPAWQC 283
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 336 ALFFDRCTAPVKLPAWQC 283
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 305 SNSPPGSVLEPDHAGVLTATSVSATSP--LCTLGTKHRAPADIIDRAPLPPN 156
           S + PG ++ P  +  + + SVS  SP  L +  T H A  D+  + P PP+
Sbjct: 692 SLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEA-FDV--KLPPPPH 740


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = -2

Query: 305 SNSPPGSVLEPDHAGVLTATSVSATSP--LCTLGTKHRAPADIIDRAPLPPN 156
           S + PG ++ P  +  + + SVS  SP  L +  T H A  D+  + P PP+
Sbjct: 584 SLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEA-FDV--KLPPPPH 632


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 356 ELALGHLRYSLTDVPPQSNSP 294
           +L +G ++YS+  +  +SN P
Sbjct: 292 QLKIGEIKYSVNKLIFRSNDP 312


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 164 PPNRVSNETMKVVVFQRRSRE 102
           PPN  +N    VVV    +RE
Sbjct: 226 PPNTENNCAQPVVVIMSPTRE 246


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 359 AELALGHLRYSLTDVP 312
           A+  LGHLR+   ++P
Sbjct: 7   AKPPLGHLRFKAPELP 22


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,691
Number of Sequences: 336
Number of extensions: 1769
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)