Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0632.Seq
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   3.1  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   4.1  
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce...    25   4.1  
SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    25   4.1  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   5.5  
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc...    25   5.5  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    25   5.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    24   9.6  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   9.6  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
 Frame = -2

Query: 329 SLTDVPPQSNSPPGSVLEPD-----HAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPL 165
           S+T   P   SP    +EP      HAG L  TSVS      T+    +   D  D    
Sbjct: 587 SITPADPVPTSPKPLAIEPVKRKPVHAGNLEVTSVSDNKLGATVQVVEQKVDDKADALTK 646

Query: 164 PPN 156
           PP+
Sbjct: 647 PPS 649


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 211  PSVQSGDVAETLVAVKTPA*SGSRTLPGGEFDWGGTSVKE*RRCPKASSARTETSRG 381
            P+V+S    E+     +PA S SR  P  +     T  +E  R   AS  ++E   G
Sbjct: 1234 PNVKSAQKIESATRTPSPAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDG 1290


>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = -2

Query: 338 LRYSLTDVPPQS--NSPPGSVLEPDHA--GVLTATSVSATSPLCTLGTKHRAPADIIDRA 171
           L YSLT V      ++  G +   D A  G +        +P  T   K R     + R 
Sbjct: 25  LNYSLTTVSDNVMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKPQMRRV 84

Query: 170 PLPPNRVS 147
           P+PP+R++
Sbjct: 85  PIPPHRMT 92


>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 224 VVTWRKRSSPLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVL 346
           VV WRK S  L++  D +R H Q G L+  V L + +   L
Sbjct: 352 VVDWRKNSDQLEVITDVLRDH-QVG-LSYVVKLMQEDLATL 390


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 88  YATPLMSPYNARLESSSTGSSFPADSP 8
           Y  P+ SPY++    SST SSF   SP
Sbjct: 132 YKKPV-SPYSSSSAVSSTSSSFDRTSP 157


>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
           Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 347 LGHLRYSLTDVPPQSNS--PPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAP 192
           L H  YSLT VPP+       G  L+ D   +L +  +   + L  +GT    P
Sbjct: 26  LKHQLYSLTQVPPERQKVIVKGGQLKDD--VLLGSVGIKPNATLLMMGTAGELP 77


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 85  ATPLMSPYNARLESSSTGSSFPADSPK 5
           +T    PY A  + ++TGSSF AD  K
Sbjct: 251 STTSSQPYGAFHQPATTGSSFVADKWK 277


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 115 DDRAKRSPTYATPLMSPYNARLESSSTGSSF 23
           ++ A+   T +T +  PY ARL S S   +F
Sbjct: 400 ENNAQNGYTVSTEITDPYLARLPSPSLRGTF 430


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 266 AGVLTATSVSATSPLCTLGTKHRAPADIIDRAPL 165
           AG++TAT ++       L  +    ADI+  +PL
Sbjct: 107 AGIVTATDIATRCVGAGLNARQTLIADIMSTSPL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,603,627
Number of Sequences: 5004
Number of extensions: 30661
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)