Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0632.Seq
(387 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 32 0.15
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.20
At3g03650.1 68416.m00368 exostosin family protein contains Pfam ... 29 1.1
At2g47390.1 68415.m05915 expressed protein 29 1.1
At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein si... 29 1.4
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 2.5
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 2.5
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 3.3
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 3.3
At3g62370.1 68416.m07006 expressed protein 27 3.3
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 3.3
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 27 5.8
At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica... 26 7.6
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 26 7.6
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 31.9 bits (69), Expect = 0.15
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 329 SLTDVPPQSNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRV 150
S T PP S +PPG P + ++ ATSP ++ K +P P PP
Sbjct: 169 SPTTSPPGSTTPPGGAHSPKSSSAVS----PATSPPGSMAPKSGSPVSPTTSPPAPPKST 224
Query: 149 S 147
S
Sbjct: 225 S 225
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.5 bits (68), Expect = 0.20
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 257 LTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYT 78
L V S LG +H PA +I+R P PP +S +++++F E +CY
Sbjct: 217 LDTEDVLLVSAKTGLGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYV 274
Query: 77 SHV 69
S V
Sbjct: 275 SVV 277
>At3g03650.1 68416.m00368 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 499
Score = 29.1 bits (62), Expect = 1.1
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = -2
Query: 305 SNSPPGSVLEPDHAGVLTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 126
S++ P VL DH V +T V PL + + +P + AP P NR ET + +
Sbjct: 37 SSTNPNRVL--DHISVSESTDV----PLIIIKNSNSSPQN---NAPKPQNREGAETEEPI 87
Query: 125 VFQRRSRETISHLCYTSHVSLQCQTRV 45
R +T S + +L+C RV
Sbjct: 88 KENRGGTKTESSMNQNRGETLRCIQRV 114
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = -2
Query: 263 GVLTATSVSATSPLCTLGTKHRAPA----DIIDRAPLPPNRVSNETMKVVVFQRRSRETI 96
G L+A++ + +GT +R P DI+D P+P S K++ +RR+ +
Sbjct: 90 GSLSASATATEDDELAIGTGYRLPPPEIRDIVDAPPVPALSFSPHRDKILFLKRRALPPL 149
Query: 95 SHL 87
+ L
Sbjct: 150 ADL 152
>At3g55780.1 68416.m06198 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase precursor GI:4097948 from
[Oryza sativa]
Length = 429
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 257 LTATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKV 129
LTA + T+ T+G + PA I L P+R++ + + +
Sbjct: 17 LTAIATPTTTSATTIGVTYSTPASISGTVQLSPDRIAEKVVSM 59
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 2.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 179 DRAPLPPNRVSNETMKVVVFQRRSRET 99
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 230 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 93
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 170 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 60
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 3.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 170 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 60
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.5 bits (58), Expect = 3.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 264 GSFNGDERFRHVTTLHAWN 208
G NG +RF H+ ++AWN
Sbjct: 175 GEGNGGDRFGHLVDIYAWN 193
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 3.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 218 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 123
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 91 TYATPLMSPYNARLESSSTGSS--FPADSP 8
T+ P +SP + + SSSTG S FP +P
Sbjct: 433 TFNLPALSPSSPEMVSSSTGQSSLFPPSAP 462
>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
to aldehyde dehydrogenase [Arabidopsis thaliana]
GI:8574427; similar to mitochondrial aldehyde
dehydrogenase [Arabidopsis thaliana]
gi|19850249|gb|AAL99612; identical to cDNA aldehyde
dehydrogenase AtALDH2a GI:20530140
Length = 538
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 104 RAIVAEKPLLS-LFHYLLGWAEAVRG 178
+++ AE P+ + LF Y GWA+ + G
Sbjct: 153 QSLTAEIPMFARLFRYYAGWADKIHG 178
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 314 PPQSNSPPGSVLEPDHAGVLTATSVSATSP 225
PP + +PP S +P + V +V+ TSP
Sbjct: 53 PPTTTTPPVSAAQPPASPVTPPPAVTPTSP 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,712,683
Number of Sequences: 28952
Number of extensions: 173654
Number of successful extensions: 562
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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