Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0629.Seq
         (883 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.79 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 517 LSGLHSGAYPCRIRLGWLRALEGVXA*SRGWV 612
           ++G HSG YP  +     + L  V A  RGW+
Sbjct: 216 VTGHHSGLYPSAVDTTTNQKLLTVDAAIRGWI 247


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 275 WPFLVGGRFVWLIPVTNETLA 213
           +P   GGR VW +P   + +A
Sbjct: 89  YPTPYGGRLVWTLPGKTKMIA 109


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 275 WPFLVGGRFVWLIPVTNETLA 213
           +P   GGR VW +P   + +A
Sbjct: 403 YPTPYGGRLVWTLPGKTKMIA 423


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 275 WPFLVGGRFVWLIPVTNETLA 213
           +P   GGR VW +P   + +A
Sbjct: 636 YPTPYGGRLVWTLPGKTKMIA 656


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 275 WPFLVGGRFVWLIPVTNETLA 213
           +P   GGR VW +P   + +A
Sbjct: 636 YPTPYGGRLVWTLPGKTKMIA 656


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 272 PFLVGGRFVWLIPVTNETLA 213
           P   GGR VW +P   + +A
Sbjct: 665 PTPYGGRLVWTLPGKTKMIA 684


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 272 PFLVGGRFVWLIPVTNETLA 213
           P   GGR VW +P   + +A
Sbjct: 665 PTPYGGRLVWTLPGKTKMIA 684


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 272 PFLVGGRFVWLIPVTNETLA 213
           P   GGR VW +P   + +A
Sbjct: 665 PTPYGGRLVWTLPGKTKMIA 684


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 272 PFLVGGRFVWLIPVTNETLA 213
           P   GGR VW +P   + +A
Sbjct: 665 PTPYGGRLVWTLPGKTKMIA 684


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,074
Number of Sequences: 336
Number of extensions: 4068
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)