Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0629.Seq
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    28   2.0  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    27   4.7  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   4.7  

>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 526 APRVGRSKQCDFTSRVSHSKPRRDVEA 446
           A R  R KQ + T R+SH + RR+++A
Sbjct: 178 AKRKDREKQLELTRRLSHLQKRRELKA 204


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 671 AVFGPFGFMHSPKRPLXAKATHPRDYA 591
           ++FGPFG +     P+  K  +P+ +A
Sbjct: 341 SLFGPFGQLEQVHMPIDKKTNNPKGFA 367


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 276 MAVLSWWTICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 151
           M+ L    + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 50  MSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,946
Number of Sequences: 5004
Number of extensions: 66531
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)