Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0629.Seq
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0404 - 28700377-28701741,28701842-28702318                       32   0.53 
04_03_0908 + 20743436-20744018,20744128-20744168,20744320-207445...    29   4.9  
01_03_0116 - 12665212-12665241,12665555-12666307                       29   6.5  
07_01_0130 - 963856-965454                                             28   8.6  

>02_05_0404 - 28700377-28701741,28701842-28702318
          Length = 613

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 655 LVSCTRRSGRWXRKLPIRGIMXERPLRP-EASLAESGKDMLHCGAPRVGRSKQC 497
           L++   R+GRW   +   G M     RP E+S+  +     H GA  VGRS  C
Sbjct: 212 LLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHC 265


>04_03_0908 +
           20743436-20744018,20744128-20744168,20744320-20744588,
           20744793-20744832
          Length = 310

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 646 CTRRSGRWXRKLPIRGIMXERPLRPEASLAESGKDMLHCGAPRVGRSKQCDFTS 485
           C+   G      P R ++   PLRPE   A+     +HC    VGR++  DF S
Sbjct: 171 CSESEGSQAEPAPARPVLA--PLRPEGVTAKLACTAVHC----VGRNRSEDFRS 218


>01_03_0116 - 12665212-12665241,12665555-12666307
          Length = 260

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 248 QIVHQLRTAMHXHPPNQERAVNLSILPVSGPAIPSPDIELSYIRT 382
           +IV  LR  +H  PP    A N+   P     +P+PD   + + T
Sbjct: 15  KIVRSLRPLVHSPPPQPAAADNIVRWPSDDELLPAPDTTTTSVVT 59


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 248 QIVHQLRTAMHXHPPNQERAVNLSILPVSGPA 343
           ++ H +   +   PPN     NL +LP+ GPA
Sbjct: 192 EMEHIINFLLRPEPPNTLSVDNLGVLPIIGPA 223


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,123,184
Number of Sequences: 37544
Number of extensions: 515220
Number of successful extensions: 1076
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)