Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0629.Seq
         (883 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)                    29   5.0  
SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_39210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -3

Query: 797 KKGTXELGFKTRLEDQVXFLPL---LNWLXSFAIS*IL-LXLREEPAVFGPFGF 648
           +KG  E GFKT  +D+V F+P+      L     + I  L L+E PA  GP  F
Sbjct: 324 RKGCREFGFKTGYKDRVRFIPIHDAARTLGPKVCAAIAGLHLKELPAANGPSFF 377


>SB_46117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = -1

Query: 82 MPXDVLGRMXATLKESACSPWPRGPGN 2
          MP DVL R  ATL  S   P P G GN
Sbjct: 1  MPLDVLDRTRATLTVSRVFPSPEGVGN 27


>SB_34797| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 36 DSFSVAXXRPRTSXGITD 89
          D+ SVA  RPRTS GITD
Sbjct: 34 DTVSVARVRPRTSKGITD 51


>SB_27909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 36  DSFSVAXXRPRTSXGITD 89
           D+ SVA  RPRTS GITD
Sbjct: 132 DTVSVARVRPRTSKGITD 149


>SB_4723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 36  DSFSVAXXRPRTSXGITD 89
           D+ SVA  RPRTS GITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_57065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 36  DSFSVAXXRPRTSXGITD 89
           D+ SVA  RPRTS GITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


>SB_29700| Best HMM Match : DUF551 (HMM E-Value=8.8)
          Length = 86

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 36  DSFSVAXXRPRTSXGITD 89
           D+ SVA  RPRTS GITD
Sbjct: 64  DTVSVAHVRPRTSKGITD 81


>SB_23080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +3

Query: 36  DSFSVAXXRPRTSXGITD 89
           D+ SVA  RPRTS GITD
Sbjct: 64  DTVSVARVRPRTSKGITD 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,087,629
Number of Sequences: 59808
Number of extensions: 568253
Number of successful extensions: 1251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)