Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0629.Seq
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.7  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   8.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   8.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 580 LRPEASLAESGKDMLHCGAPRVGRSKQCDFT 488
           +  E+ LAES + +  C +   G  K+C+ +
Sbjct: 66  IHEESYLAESSRSIDPCASKYCGIGKECELS 96


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 351 LGIAGPDTGRIDRLTALS 298
           LGI+  D  RID+ T L+
Sbjct: 8   LGISSSDDNRIDQATGLT 25


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 351 LGIAGPDTGRIDRLTALS 298
           LGI+  D  RID+ T L+
Sbjct: 8   LGISSSDDNRIDQATGLT 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,813
Number of Sequences: 438
Number of extensions: 4817
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)