Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0629.Seq
         (883 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46130.1 68416.m04992 myb family transcription factor (MYB48)...    29   5.4  
At2g45050.1 68415.m05608 zinc finger (GATA type) family protein ...    28   9.5  

>At3g46130.1 68416.m04992 myb family transcription factor (MYB48)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 256

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 492 KSHCLDLPTLGAPQWSISL 548
           +SHCL  P L +P W  SL
Sbjct: 202 QSHCLSYPNLASPSWESSL 220


>At2g45050.1 68415.m05608 zinc finger (GATA type) family protein
           identical to cDNA GATA transcription factor 2 GI:2959731
          Length = 264

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 650 FMHSPKRPLXAKATHPRDYA*TPSKARSQPSRIRQGYAPLWSP 522
           F   P  PL    T  +     P K RS+ SR    +A  WSP
Sbjct: 90  FADFPANPLGGTMTSVKTETSFPGKPRSKRSRAPAPFAGTWSP 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,639,849
Number of Sequences: 28952
Number of extensions: 385083
Number of successful extensions: 829
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)