Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0628.Seq
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0782 - 31716860-31717150,31717400-31717612,31718497-317186... 40 0.002
08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107 40 0.002
09_04_0008 + 13651997-13652072,13652440-13652541,13653138-136531... 40 0.003
06_01_0830 + 6261629-6261704,6261829-6261974,6262086-6262310,626... 39 0.004
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432... 37 0.022
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572... 34 0.12
01_05_0009 - 17101633-17101836,17101948-17102040,17102122-171023... 34 0.16
08_02_0103 - 12400494-12400626,12400882-12400958 29 5.9
>02_05_0782 -
31716860-31717150,31717400-31717612,31718497-31718642,
31718742-31718817
Length = 241
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +1
Query: 250 LCKDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNY 429
+ KDL ++ K E G L +I P ++ K + A+ G+GTDE ++ I+ T +
Sbjct: 143 ITKDLKADPKDEFLGTLRAIIRCFTCP-DRYFEKVIRLALGGMGTDENSLTRIITTRAEV 201
Query: 430 GIRTISAFYEQ 462
++ I Y++
Sbjct: 202 DLKLIKEAYQK 212
Score = 35.9 bits (79), Expect = 0.039
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQASRSRR 236
LRKA KG+GT+EK II +L R Q RR
Sbjct: 20 LRKAFKGWGTNEKLIISILAHRDAAQRRAIRR 51
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 349 KELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGQE 477
++L A G GT+E+ II IL R I Y + YG+E
Sbjct: 18 EQLRKAFKGWGTNEKLIISILAHRDAAQRRAIRRAYAEAYGEE 60
>08_02_0726 + 20452492-20453238,20453676-20453765,20453904-20454107
Length = 346
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Frame = +1
Query: 274 LKSELTGN----LENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRT 441
+KSE +GN L ++ +P +F AK LH+A+ G+GT++ +I ++ T + ++
Sbjct: 251 VKSETSGNFGFGLLTILRCAESPAKYF-AKVLHEAMKGLGTNDTTLIRVVTTRAEVDMQY 309
Query: 442 ISAFYEQLY 468
I A Y + Y
Sbjct: 310 IKAEYHRSY 318
Score = 35.5 bits (78), Expect = 0.052
Identities = 21/80 (26%), Positives = 40/80 (50%)
Frame = +1
Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 435
+DL+ L +EL+G+ + ++ + A LH A++G TD A E++C+ + +
Sbjct: 59 QDLLHRLAAELSGHHKRAVLLWVLDPASRDAAVLHQALNGDVTDMRAATEVVCSRTPSQL 118
Query: 436 RTISAFYEQLYGQEPGIGLK 495
+ Y +G G GL+
Sbjct: 119 LVVRQAYLARFGGGGGGGLE 138
>09_04_0008 +
13651997-13652072,13652440-13652541,13653138-13653142,
13653970-13654188,13654686-13654901,13654989-13655078,
13656307-13656507
Length = 302
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Frame = +1
Query: 256 KDLISELKSELTGNLENVIVALMTPLPH---FYAKELHDAVSGIGTDEEAIIEILCTLSN 426
+ L +KSE +GN E ++ ++ + ++AK L ++ G+GTD+ +I ++ T +
Sbjct: 202 RSLEKVVKSETSGNFELALLTILRCAENPAKYFAKVLRKSMKGMGTDDSTLIRVVVTRTE 261
Query: 427 YGIRTISAFYEQLY 468
++ I A Y + Y
Sbjct: 262 IDMQYIKAEYYKKY 275
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRR 206
LRK+MKG GTD+ +I V+ R
Sbjct: 238 LRKSMKGMGTDDSTLIRVVVTR 259
>06_01_0830 +
6261629-6261704,6261829-6261974,6262086-6262310,
6262910-6263122,6264007-6264300
Length = 317
Score = 39.1 bits (87), Expect = 0.004
Identities = 19/69 (27%), Positives = 37/69 (53%)
Frame = +1
Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 435
KDL ++ K E L +I P ++ K + A++G+GTDE ++ I+ T + +
Sbjct: 220 KDLKADPKDEFLSTLRAIIRCFCCP-DRYFEKVIRLAIAGMGTDENSLTRIITTRAEVDL 278
Query: 436 RTISAFYEQ 462
+ I+ Y++
Sbjct: 279 KLITEAYQK 287
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQASRSRR 236
LRKA +G+GT+E II +L R Q RR
Sbjct: 20 LRKAFQGWGTNEALIISILAHRDAAQRRAIRR 51
>09_03_0079 +
12142390-12142459,12142792-12143006,12143050-12143268,
12143345-12143932
Length = 363
Score = 36.7 bits (81), Expect = 0.022
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +1
Query: 346 AKELHDAV--SGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGQEPGIGLKRR 501
AK L++AV S D+ +++++L S +R + A Y +LYGQE LKR+
Sbjct: 195 AKTLYEAVEISAARVDQRSVLQLLRHRSGDQLRAVLASYRRLYGQELARALKRK 248
>05_04_0139 +
18355597-18355696,18356665-18356778,18357118-18357263,
18357365-18357910,18358397-18358600
Length = 369
Score = 34.3 bits (75), Expect = 0.12
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 298 LENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGQ 474
+ ++ V P P A+ + AV G GTDE A+IEIL + I+ YE LY +
Sbjct: 47 MASISVPNPAPSPTEDAESIRKAVQGWGTDENALIEILGHRTAAQRAEIAVAYEGLYDE 105
Score = 32.7 bits (71), Expect = 0.36
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 138 TLRKAMKGFGTDEKAIIDVLCRRGIVQ 218
++RKA++G+GTDE A+I++L R Q
Sbjct: 65 SIRKAVQGWGTDENALIEILGHRTAAQ 91
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +1
Query: 283 ELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQ 462
+L L+ + L +P HF A+ + ++ G+GTDEE + + + + + + Y+
Sbjct: 281 QLAAVLKAALWCLTSPEKHF-AEVIRTSILGLGTDEEMLTRGIVSRAEVDMEKVKEEYKV 339
Query: 463 LY 468
Y
Sbjct: 340 RY 341
>01_05_0009 -
17101633-17101836,17101948-17102040,17102122-17102334,
17102514-17102651,17102764-17102909,17106264-17106339
Length = 289
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +1
Query: 298 LENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGQE 477
+ ++V +TP P A L A G GTDE+A+I +L + I YE+ Y +
Sbjct: 1 MATIVVPPVTPSPAEDADALLKAFQGWGTDEQAVIGVLAHRDATQRKQIRLTYEENYNEN 60
Query: 478 PGIGLKRRHVGTLSR 522
L+ G L R
Sbjct: 61 LIQRLQSELSGDLER 75
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +3
Query: 141 LRKAMKGFGTDEKAIIDVLCRRGIVQASRSR 233
L KA +G+GTDE+A+I VL R Q + R
Sbjct: 20 LLKAFQGWGTDEQAVIGVLAHRDATQRKQIR 50
Score = 31.5 bits (68), Expect = 0.84
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSN 426
++LI L+SEL+G+LE + + A ++ A I D I+EI CT S+
Sbjct: 59 ENLIQRLQSELSGDLERAMYHWVLDPVERQAVMVNTATKCIHEDYAVIVEIACTNSS 115
>08_02_0103 - 12400494-12400626,12400882-12400958
Length = 69
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +2
Query: 176 EGYHRRALPPRHRASLEIAETFKTNYAR 259
+G RALPP HR L + ET T AR
Sbjct: 17 QGCQPRALPPCHRQQLAMVETTDTVLAR 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,540,936
Number of Sequences: 37544
Number of extensions: 423420
Number of successful extensions: 1102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -