Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0628.Seq
         (826 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35578| Best HMM Match : Annexin (HMM E-Value=1e-19)                 68   8e-12
SB_37033| Best HMM Match : Annexin (HMM E-Value=0)                     64   1e-10
SB_26806| Best HMM Match : Annexin (HMM E-Value=0)                     54   2e-07
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)                51   1e-06
SB_47771| Best HMM Match : Annexin (HMM E-Value=0)                     47   2e-05
SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)                    31   1.5  
SB_12472| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)                     29   3.5  
SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 28   8.0  

>SB_35578| Best HMM Match : Annexin (HMM E-Value=1e-19)
          Length = 146

 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 33/61 (54%), Positives = 44/61 (72%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 435
           KDL+++LKSEL+GNLE  ++A+M P   + AK L   + G GTDEE +I+ILCT SN G 
Sbjct: 32  KDLMNDLKSELSGNLEECLLAMMEPSVLYDAKCLRRGMRGAGTDEETLIDILCTRSNQGN 91

Query: 436 R 438
           R
Sbjct: 92  R 92



 Score = 35.1 bits (77), Expect = 0.070
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +3

Query: 141 LRKAMKGFGTDEKAIIDVLCRR 206
           LR+ M+G GTDE+ +ID+LC R
Sbjct: 65  LRRGMRGAGTDEETLIDILCTR 86


>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 287

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 31/74 (41%), Positives = 46/74 (62%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 435
           +DLI +LKSE+ G  E+ ++ALMTP   + A  L  A+ G+GTDE  +IE+L T +N  I
Sbjct: 132 RDLIKDLKSEVGGYFEDTVIALMTPPAEYDATLLRKAIKGLGTDEAVLIEVLTTRTNDEI 191

Query: 436 RTISAFYEQLYGQE 477
             I   Y  L+ ++
Sbjct: 192 IAIRNAYNTLFSRD 205



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +3

Query: 141 LRKAMKGFGTDEKAIIDVLCRR 206
           LRKA+KG GTDE  +I+VL  R
Sbjct: 165 LRKAIKGLGTDEAVLIEVLTTR 186


>SB_26806| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 829

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 435
           KDL+ +L  ++  ++   + +L+ P      + L+ A+ G+GT E  +IEILCT SN  I
Sbjct: 488 KDLVEQLDGKVAIDVHEAVTSLLLPATKADVRSLYYAMKGLGTKEAQLIEILCTRSNAEI 547

Query: 436 RTISAFYEQLYGQ 474
           + I   Y + YG+
Sbjct: 548 QEIKQEYNKKYGR 560



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 138 TLRKAMKGFGTDEKAIIDVLCRR 206
           +L  AMKG GT E  +I++LC R
Sbjct: 520 SLYYAMKGLGTKEAQLIEILCTR 542


>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
          Length = 803

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/61 (45%), Positives = 35/61 (57%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYGI 435
           KDL  ELKS L   +   + +L        AK L++A  G GTDE+A+I ILCT SN G 
Sbjct: 51  KDLNEELKSVLDEEIMKALESLAEEAAMKDAKTLYEATKGFGTDEDALISILCTRSNKGQ 110

Query: 436 R 438
           R
Sbjct: 111 R 111



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/57 (36%), Positives = 37/57 (64%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSN 426
           +D++  L+  L  ++++ + +  +    F AK LHDA+ G+GTDE+ +IEI+CT  N
Sbjct: 396 QDILEALQPHLGDDVKDPVESFFSSSSAFDAKCLHDAIKGLGTDEDLLIEIICTRKN 452



 Score = 35.9 bits (79), Expect = 0.040
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 138 TLRKAMKGFGTDEKAIIDVLCRR 206
           TL +A KGFGTDE A+I +LC R
Sbjct: 83  TLYEATKGFGTDEDALISILCTR 105



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 141 LRKAMKGFGTDEKAIIDVLCRR 206
           L  A+KG GTDE  +I+++C R
Sbjct: 429 LHDAIKGLGTDEDLLIEIICTR 450


>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 529

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 34/59 (57%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAIIEILCTLSNYG 432
           KDL+ +L  ++  ++   + +L+ P      + L+ A+ G+GT E  +IE LCT SN G
Sbjct: 91  KDLVEQLDGKVADDVHEAVTSLLLPATQADVRSLYYAMKGLGTKEAQLIETLCTRSNTG 149



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = +1

Query: 256 KDLISELKSELTGNLENVIVALMTPLPHFYAKELHDAVSGIGTDEEAII 402
           KDL++ELKSEL+G  E+ IVAL+ P     A  LH A+       + I+
Sbjct: 350 KDLVNELKSELSGKFEDAIVALLLPPEQLDANALHGAMQAKRVSADEIV 398



 Score = 35.5 bits (78), Expect = 0.053
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +3

Query: 141 LRKAMKGFGTDEKAIIDVL 197
           L+KAMKGFG+DE+AII+VL
Sbjct: 311 LKKAMKGFGSDEEAIIEVL 329



 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/44 (36%), Positives = 28/44 (63%)
 Frame = +1

Query: 346 AKELHDAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGQE 477
           A++L  A+ G G+DEEAIIE+L + +      I+  ++Q Y ++
Sbjct: 308 AEKLKKAMKGFGSDEEAIIEVLQSCNLEQRLAIAQSFKQQYDKD 351


>SB_49312| Best HMM Match : Mucin (HMM E-Value=0.19)
          Length = 925

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +2

Query: 269 ANSRVNSPATWKMSSSH**LPCPTSTLRSSTMLSQELEPTKKPSSRSCARFPTMVSVPYP 448
           A    N P T    S    +P  T+   +    ++ L+PTK   S +    PT+  +P  
Sbjct: 206 AKGTYNFPLTKSTKSQPATIPVSTTKFPTEAQTTEYLQPTKTSLSSTAPPHPTVYRLPST 265

Query: 449 HFTNNCTGKSL 481
              NN T  ++
Sbjct: 266 ESINNFTDTAI 276


>SB_12472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 333 APLLR*GAPRCCLRNWNRRRSHHRDP 410
           +P L    PRCC +N N R   H DP
Sbjct: 138 SPFLYEPGPRCCNQNMNNRSKCHADP 163


>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3142

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 149  GYEGLRHR*EGYHRRALPPRHRASLEIAETFKTNYART*LANSRVN-SPATWKMSSSH** 325
            GYEGL  R       A PPR R     +  +K  +  T  ++S  N SP T   +SSH  
Sbjct: 2770 GYEGLEVRKTVSEGVARPPRRRKPTARSIRWKELHCNTSSSSSSQNTSPGTSPYTSSHQI 2829

Query: 326  LPCPTSTLRSSTMLSQELEPTKKPSSRS 409
               P   L   +  S   +P+ +PS  S
Sbjct: 2830 GRSPNHALPHPSTGSPS-QPSSRPSRSS 2856


>SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 188 RRALPPRHRASLEIAETFKTNYART*LANSRVNSPATWKMSSS 316
           R+A+  R++ ++ + +  K+NY R  +AN + N    WK  +S
Sbjct: 243 RKAMASRNKVNIALRQA-KSNYYRNKIANQKNNPKEAWKTINS 284


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 507 RDTFKRLCVSFVHGQFGDEKTRGIDERLK 593
           RD   +  V   +G+FG +KT  I ERLK
Sbjct: 379 RDNVAKSLVVLAYGEFGHQKTEEIKERLK 407


>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
          Length = 502

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 338 TSTLRSSTMLSQELEPTKKPSSRSCARFPTMVSVPYPHFTNNCTGKSLESDL 493
           T   RSST  S  +    +  S+S A +PTM +  Y   +    G+ L +D+
Sbjct: 232 TQCARSSTTRSYRISKRARSESQSAAIWPTMSTARYGRPSCTQNGRDLSADI 283


>SB_22903| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 885

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 563 FIAELAMHKRHAQSLESVPTCRLLSPIPGSCPYSCS*NADMVRIP*LESVHRISMMASSS 384
           F++  +   R+    ES  T   L P PG  P+S + NA M   P    V RIS + S++
Sbjct: 587 FLSTKSFPPRYRSKEESNSTVPSLRPFPGDEPHSAA-NALM---PPAREVLRISAVNSTA 642

Query: 383 VP 378
           +P
Sbjct: 643 IP 644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,137,812
Number of Sequences: 59808
Number of extensions: 473156
Number of successful extensions: 1168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)