Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0628.Seq
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   2.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   2.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   4.5  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    22   6.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 571 GASMKGSSLKARWLXATXAGRXV 639
           GA+  GSS+KA WL    A   V
Sbjct: 578 GATCLGSSIKAMWLRRALASLMV 600


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 357 PRCCLRNWNRRRSHHRDPVHAFQLWYPYHI 446
           P CC + W+ ++S  R  +++  L YP  I
Sbjct: 364 PNCCGK-WSSQKSEPRRSIYSSLLRYPRSI 392


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 825 PFFKCLPRKIXFLNXXPXNSFRFK 754
           P F+C+     F    P N++RF+
Sbjct: 146 PRFRCIGPPTPFPRFIPPNAYRFR 169


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = +1

Query: 484 IGLKRRHVGTLSRDCACRLC 543
           +G  + H+ T +  C C LC
Sbjct: 29  LGALKMHIRTHTLPCKCHLC 48


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
 Frame = -3

Query: 611 SHRAFKLEPFIDA--PGF----------FIAELAMHKRHAQSLESVP 507
           +H   K EP +D   PGF          FIAE+A   R+  ++ +VP
Sbjct: 185 NHLMTKFEPDLDMNHPGFADKEYRARRKFIAEIAFAYRYGDAIPTVP 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,691
Number of Sequences: 438
Number of extensions: 3988
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)