Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0624.Seq
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   4.3  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   7.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   7.5  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   7.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +1

Query: 301 PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 465
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 466 SCA 474
           S A
Sbjct: 232 SDA 234


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 719 LFLFLSXLTKVXXGFFFXIAPTFGTXQGAPRLR 817
           + +FL+ LT V    F+ + P F   + AP L+
Sbjct: 103 ILIFLAALTSVKVFAFYLLVPIFVVYKAAPLLK 135


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 348 KRRPVNCNTTHYRANWVPGPPEF*SLD 268
           + +P   N  H  +  VPGPP F  L+
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAFNELE 912


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 21  KFKLLQWPVNIDLAVLQYLKSITSMLPLPLITYLTSKNSIDKLLEIPIF 167
           +F++  W  +++  V +  KSI +   L   T+LT  NS  K ++  I+
Sbjct: 261 RFRIRSWRSSLNFLVKELDKSIKNFAYLEHRTFLTISNSAAKDMKREIY 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,099,193
Number of Sequences: 5004
Number of extensions: 58266
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)