Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0622.Seq
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   3.3  
SPBC23E6.03c |nta1||protein N-terminal amidase Nta1 |Schizosacch...    27   3.3  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    27   4.4  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   5.8  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   7.6  

>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 513 FALNMSSWPKEXDV----RCIRL*RCTDVRIPQPGTSFLMKYVLNKCSRXDFH 659
           ++  +SS P E ++      ++L   T + +  PG+  L++Y+L  CS  + H
Sbjct: 389 YSAQISSDPAEEEIANAMHSLKLEPETSIYLTNPGSLSLLEYLLRLCSLQELH 441


>SPBC23E6.03c |nta1||protein N-terminal amidase Nta1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 386 PFKK*-FGNELVIENDHPPFLSIGIARPLICIDV 288
           PF+K  + N ++ E +H   +S  ++RP+IC+ +
Sbjct: 166 PFEKFEYANFILRELEHQQMVSSNVSRPIICLSM 199


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 628 TYFIRKLVPGCGIRTSVHRYKRMHRTSXSLGHDDI 524
           T +IRKL    GI  +V+ Y+R+   S  +  +D+
Sbjct: 607 TLYIRKLYEELGIDDTVNSYRRLIAMSCGINPEDL 641


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 189 IRNHTPSCSQNLIKTT*CSFSMTSL 263
           I NH PS  Q+ +K    SFS TSL
Sbjct: 327 IANHAPSFPQSSVKKLDSSFSPTSL 351


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 358 NSFPNYFLKGKWPPTKIKK 414
           NS P +FLK  W P K K+
Sbjct: 85  NSPPTFFLKSSWLPLKQKR 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,262
Number of Sequences: 5004
Number of extensions: 54718
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)