Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0622.Seq
         (841 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    24   5.0  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   6.6  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    23   8.7  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   8.7  

>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 695 PXNYNLRNHGGKTLLXESGTGKXTXPANFP 784
           P NYNL N+G      E G  +   P  +P
Sbjct: 526 PPNYNLLNYGSGGGGAEMGCHRDIDPEEYP 555


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 480 SIQSSIMTKVLFALNMSSWPKEXDVRCIRL*RCTDVRIP 596
           S+ S  + +VLF L  S  P    +    L  C DV  P
Sbjct: 469 SVSSETVVQVLFGLKRSFTPGPDGIPASVLINCKDVLAP 507


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 643 EHLLSTYFIRKLVPG 599
           EH  +T+F+RK+ PG
Sbjct: 328 EHKTNTHFMRKIPPG 342


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 673 CYPSPWKSXREHLL 632
           C+P PWK  R  LL
Sbjct: 473 CFPQPWKKQRLVLL 486


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,680
Number of Sequences: 2352
Number of extensions: 13375
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)