Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0621.Seq
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 116 3e-27
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 31 0.19
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom... 29 0.59
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 4.1
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom... 26 5.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.2
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 25 9.5
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 116 bits (279), Expect = 3e-27
Identities = 53/85 (62%), Positives = 67/85 (78%)
Frame = +1
Query: 256 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 435
+++ P LE+LLP ++GNVGFVFT DL EVR+ ++ N + APARP AIAPL V +PA NT
Sbjct: 67 INDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNT 126
Query: 436 GLGPEKTSFFQALSIPXKISKGTIE 510
G+ P KTSFFQAL IP KI++GTIE
Sbjct: 127 GMEPGKTSFFQALGIPTKITRGTIE 151
Score = 63.3 bits (147), Expect = 3e-11
Identities = 27/57 (47%), Positives = 41/57 (71%)
Frame = +2
Query: 80 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 250
K+ YF K+ L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2
Query: 545 KVGASEATLLNMXIISPF 598
KVG SEATLLNM ISPF
Sbjct: 164 KVGPSEATLLNMLNISPF 181
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 30.7 bits (66), Expect = 0.19
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 235 AQSHQRPLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLS 411
A H ++ + KL + G VG +FT EV E+ VQ AR GA+AP +
Sbjct: 76 ALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFT 134
Query: 412 VVIPA 426
VIPA
Sbjct: 135 HVIPA 139
>SPAC1527.02 |sft2||Golgi transport protein Sft2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 29.1 bits (62), Expect = 0.59
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = -3
Query: 405 WGNGTRTS--WSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQGSLMALRI 232
W N RTS WS D+ + T+ + ++ + +L W++++ I + GSL I
Sbjct: 27 WYNRLRTSMPWSNDYT--EIPTNASGGNSYFQSSEFSLSRWERYMLFGICLLGSLACYAI 84
Query: 231 IVFFPMSTILEPR 193
F +L+PR
Sbjct: 85 ACFMFPVLVLKPR 97
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 353 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 255
L +T +S + PTLP + + S +G+LSR
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -1
Query: 449 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 279
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 278 SRAGL 264
S L
Sbjct: 195 SEEEL 199
>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 220 KKHNDAQSHQRPLDNNPALEKLLPHIKGNV 309
KK NDA++ + L+NNP L P ++ N+
Sbjct: 288 KKLNDAENRIKELENNPTL-SFNPELEKNL 316
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +2
Query: 254 PWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTT 433
P T+ + C TS + L + +P ++ + TNC T + + P+ + +T
Sbjct: 521 PVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSST 579
Query: 434 PAS 442
P +
Sbjct: 580 PVT 582
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 202 QYRAHGKKHNDAQSHQRPLDNNPALEKLLPHIKGNVGFVF 321
++R + K ++AQS + L+ P LEK P + V F F
Sbjct: 470 KFRYNAAKSSEAQSRIKKLEKLPILEK--PQTEEEVEFEF 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,093
Number of Sequences: 5004
Number of extensions: 57615
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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