Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0621.Seq
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 135 3e-32
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 32 0.35
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 31 0.82
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 3.3
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 5.8
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 5.8
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15) 28 7.6
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 135 bits (326), Expect = 3e-32
Identities = 61/85 (71%), Positives = 73/85 (85%)
Frame = +1
Query: 256 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 435
L+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NT
Sbjct: 51 LENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNT 110
Query: 436 GLGPEKTSFFQALSIPXKISKGTIE 510
GLGPEKTSFFQAL+IP KI++GTIE
Sbjct: 111 GLGPEKTSFFQALAIPTKIARGTIE 135
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/48 (75%), Positives = 40/48 (83%)
Frame = +2
Query: 107 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIK 250
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIR 48
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Frame = +2
Query: 128 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCHTSRAT 307
+C + V S +QQ +S+R + + ++ ++ +I+P+R C HTS
Sbjct: 51 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110
Query: 308 LAS-CSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTPA 439
L++ S+R C T SK+ V + Q PA
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPA 155
Score = 31.5 bits (68), Expect = 0.62
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +2
Query: 107 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNC 286
++L +C + V S +QQ +S+R + + ++ ++ +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263
Query: 287 CHTSRATLAS-CSPAETSLRSVTNCWRTKSKL 379
HTS L++ S+R C T SK+
Sbjct: 264 QHTSSKVLSTYVQSGVVSIRPARCCQHTSSKV 295
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 128 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCHTSRAT 307
+C + V S +QQ +S+R + + ++ ++ +I+P+R C HTS
Sbjct: 320 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 379
Query: 308 L-ASCSPAETSLRSVTNCWRTKSKL 379
L A S+R C T SK+
Sbjct: 380 LSAYVQQGVVSIRPARCCQHTSSKV 404
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 146 ADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCHTSRATL-ASCS 322
+ V S +QQ +S+R + + ++ ++ +I+P+R C HTS L A
Sbjct: 301 SSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQ 360
Query: 323 PAETSLRSVTNCWRTKSKL 379
S+R C T SK+
Sbjct: 361 QGVVSIRPARCCQHTSSKV 379
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +2
Query: 128 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCHTSRAT 307
+C + V S +QQ +S+R + + ++ ++ +I+P+R C HTS
Sbjct: 345 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKV 404
Query: 308 L-ASCSPAETSLRSVTNCWRTKSKL 379
L A S+R C T SK+
Sbjct: 405 LSAYVQQGVVSIRPARCCEHTSSKV 429
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 173 QQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCHTSRATLAS-CSPAETSLRSV 349
QQ +S+R + + ++ ++ +I+P+R C HTS L++ S+R
Sbjct: 41 QQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPA 100
Query: 350 TNCWRTKSKLQLVLVPL 400
C T SK+ V L
Sbjct: 101 RCCQHTSSKVLSTYVQL 117
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -3
Query: 507 NSTL*NLXRDRKSLEERGLLWTEAGVVGGNDD*QWG 400
NS + R K+LEERGLL+ +GV GG + ++G
Sbjct: 149 NSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 428 WAGMTTDNGAMAPGRAGAWTLFSNSL 351
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 365 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 255
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 121 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKK 225
VPKMFH RG+ T+A P + T +L+ R G++
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRR 3891
>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +2
Query: 149 DNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCHTSRATLASCSPA 328
D +G QQ + ++ L L+G + R+ + T SR C + SCS
Sbjct: 1 DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60
Query: 329 ETSLRSVTNCWRT 367
SL W T
Sbjct: 61 GNSLLHTHFTWTT 73
>SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)
Length = 944
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 306 VALDVWQQFLEGWIVVQGSLMALRIIVFFPMSTILEPRSE 187
+ L + + L GW QG+LM++R++ +S LEP E
Sbjct: 218 LGLSAYNKILHGW-AEQGNLMSVRVMHKLILSEDLEPDME 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,008,958
Number of Sequences: 59808
Number of extensions: 473738
Number of successful extensions: 1212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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