Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0621.Seq
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    26   0.90 
AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative deoxynucl...    24   3.7  
AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate deo...    24   3.7  
AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein p...    24   4.8  

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 157 GLATDAADPYLATWLQYRAHGKKHNDAQSHQRPLDNNP 270
           G ATD  +  LA   Q + H  +H   Q HQ+   ++P
Sbjct: 293 GSATDNNNYILAQQQQQQHHHHQHQPQQQHQQQYHSHP 330


>AJ439060-5|CAD27756.1|  245|Anopheles gambiae putative
           deoxynucleoside kinase protein.
          Length = 245

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 622 CLTTRPYEKWRD 587
           CL T P EKWR+
Sbjct: 43  CLLTEPVEKWRN 54


>AF488801-1|AAO49462.1|  246|Anopheles gambiae multisubstrate
           deoxyribonucleoside kinaseprotein.
          Length = 246

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 622 CLTTRPYEKWRD 587
           CL T P EKWR+
Sbjct: 43  CLLTEPVEKWRN 54


>AB097148-1|BAC82627.1|  357|Anopheles gambiae gag-like protein
           protein.
          Length = 357

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 358 TVCHGPQRGLRG*TRSQRCP*CVATVSRGLDCCPGVFDGFAH 233
           T+C G   G+    ++Q C  C A V  GL+C     + FA+
Sbjct: 12  TLC-GEVTGVSYRGQAQTCRNCAAPVHHGLNCVQNRQNRFAN 52


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,541
Number of Sequences: 2352
Number of extensions: 13627
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)