Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0621.Seq
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   125   3e-29
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore co...    29   3.8  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   5.0  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   6.7  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  125 bits (301), Expect = 3e-29
 Identities = 59/85 (69%), Positives = 68/85 (80%)
 Frame = +1

Query: 256 LDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNT 435
           L  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  NT
Sbjct: 69  LGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNT 128

Query: 436 GLGPEKTSFFQALSIPXKISKGTIE 510
           G+GPEKTSFFQAL IP KI++GTIE
Sbjct: 129 GMGPEKTSFFQALQIPTKIARGTIE 153



 Score =  102 bits (244), Expect = 3e-22
 Identities = 41/66 (62%), Positives = 58/66 (87%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 233 MRKAIK 250
           +RKA++
Sbjct: 61  IRKALR 66



 Score = 34.3 bits (75), Expect = 0.077
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 480 PXQDFKGYY*IINDVHXLKPVTRLELLKPPFSTCXSSLHFSYGLVVKQVY 629
           P +  +G   I+NDVH +K   ++   +           FSYGLVV+QVY
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVY 193



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +2

Query: 530 LEAGDKVGASEATLLNMXIISPF 598
           ++ GDKVGASE+ LLNM  ++PF
Sbjct: 161 IKEGDKVGASESALLNMLGVTPF 183


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 274 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPE 450
           L K    +KG  G +FT     EV  +  E   +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 451 KTSFFQALSIPXKISKGTI 507
                + L +P K+ KG I
Sbjct: 150 MEPQLRKLGLPTKLDKGVI 168



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/74 (25%), Positives = 37/74 (50%)
 Frame = +2

Query: 26  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 205
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 206 IVLMGKNTMMRKAI 247
               GKN ++  A+
Sbjct: 65  RFFFGKNNVISIAL 78


>U80033-3|AAC48199.1| 1847|Caenorhabditis elegans Nuclear pore complex
            protein protein12 protein.
          Length = 1847

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 302  PLMCGNSFSRAGLLSRGL*WLCASLCFFP*ARYWSHVARYGSAASVAS 159
            P  C  +F+R   +   + WL  S  F P   Y   + R+ S+ S +S
Sbjct: 1530 PFECQVAFTRRSKIISAVNWLTVSAVFSPVFGYGCEIRRFDSSVSTSS 1577


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 245 IKDPWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQ-LVLVPLPHCQSSF 421
           I DP TT  P+     T  A+  S +PA T+  S+     T   ++ L++ PLP  +S+ 
Sbjct: 514 IADPPTT--PNTEPATTELASTTSATPAVTAPASIVPVTPTAPIVETLIVPPLPPVESNP 571

Query: 422 PPTTP 436
              TP
Sbjct: 572 EEVTP 576


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +2

Query: 8   LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 121
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 416 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 306
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 355 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPXKISKGT 504
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,236
Number of Sequences: 27780
Number of extensions: 329298
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)