Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0621.Seq
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   101   4e-22
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   101   4e-22
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      100   7e-22
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    29   2.0  
At5g55870.1 68418.m06964 hypothetical protein contains Pfam prof...    28   4.7  
At5g13260.1 68418.m01523 expressed protein                             28   4.7  
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    28   6.2  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    28   6.2  
At3g50610.1 68416.m05534 hypothetical protein                          28   6.2  
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    28   6.2  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  101 bits (242), Expect = 4e-22
 Identities = 47/85 (55%), Positives = 63/85 (74%)
 Frame = +1

Query: 265 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 444
           N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+   NTGL 
Sbjct: 74  NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133

Query: 445 PEKTSFFQALSIPXKISKGTIESST 519
           P +TSFFQ L+IP KI+KGT+E  T
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIIT 158



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/66 (53%), Positives = 47/66 (71%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 233 MRKAIK 250
           M+++++
Sbjct: 61  MKRSVR 66



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 530 LEAGDKVGASEATLLNMXIISPF 598
           ++ GDKVG+SEA LL    I PF
Sbjct: 163 IKQGDKVGSSEAALLAKLGIRPF 185


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  101 bits (242), Expect = 4e-22
 Identities = 47/85 (55%), Positives = 63/85 (74%)
 Frame = +1

Query: 265 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 444
           N A+  LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+   NTGL 
Sbjct: 74  NTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 133

Query: 445 PEKTSFFQALSIPXKISKGTIESST 519
           P +TSFFQ L+IP KI+KGT+E  T
Sbjct: 134 PSQTSFFQVLNIPTKINKGTVEIIT 158



 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/66 (53%), Positives = 47/66 (71%)
 Frame = +2

Query: 53  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 232
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 233 MRKAIK 250
           M+++++
Sbjct: 61  MKRSVR 66



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 530 LEAGDKVGASEATLLNMXIISPF 598
           ++ GDKVG+SEA LL    I PF
Sbjct: 163 IKQGDKVGSSEAALLAKLGIRPF 185


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  100 bits (240), Expect = 7e-22
 Identities = 47/85 (55%), Positives = 62/85 (72%)
 Frame = +1

Query: 265 NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLG 444
           N A   LLP ++GNVG +FT+GDL EV +++ + KV APAR G +AP+ VV+   NTGL 
Sbjct: 75  NQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLD 134

Query: 445 PEKTSFFQALSIPXKISKGTIESST 519
           P +TSFFQ L+IP KI+KGT+E  T
Sbjct: 135 PSQTSFFQVLNIPTKINKGTVEIIT 159



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +2

Query: 68  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI 247
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 248 K 250
           +
Sbjct: 67  R 67



 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 530 LEAGDKVGASEATLLNMXIISPF 598
           ++ GDKVG+SEA LL    I PF
Sbjct: 164 IKKGDKVGSSEAALLAKLGIRPF 186


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 262 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 360
           N P ++K    PHI   VGF+ T+GD+  + D  L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815


>At5g55870.1 68418.m06964 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 224

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 25/101 (24%), Positives = 38/101 (37%)
 Frame = +2

Query: 113 LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDPWTTIQPSRNCCH 292
           L + P C IVG    G+  + ++ + +  S    + K   +     DP  TI  S     
Sbjct: 25  LMQTPPCSIVGVQPCGADHLGRLDVMMM-SRRTCLEKKVPLELVNSDPMVTIGSSHGWVA 83

Query: 293 TSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQS 415
           T +         +  L  V +    K      LV LPHCQ+
Sbjct: 84  TLKED--GILRLQDDLNPVASDTNPKRIPLPPLVTLPHCQT 122


>At5g13260.1 68418.m01523 expressed protein
          Length = 537

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 212 ARYWSHVARYGSAASVASPRYRH 144
           ARYW   +RYG  + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -1

Query: 413 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 300
           T+NGA   G A      S SLS  S  SP VN +  LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 272 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 376
           P R   HT+R    SC   ETS  +VT+    K++
Sbjct: 33  PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 292 HIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEK 453
           H KGNV     + D       KLL+  VQ   + G+    +   P H+ G+G +K
Sbjct: 45  HKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPGHSPGVGHKK 99


>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -3

Query: 429 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 283
           +G + +  +G+ T      + +LQ      + +S+GE E    +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,599
Number of Sequences: 28952
Number of extensions: 321513
Number of successful extensions: 925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)