Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0619.Seq
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31240.1 68414.m03823 expressed protein identical to hypothet...    29   3.7  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    28   6.4  
At1g11770.1 68414.m01351 FAD-binding domain-containing protein s...    28   6.4  
At3g22520.1 68416.m02846 expressed protein                             28   8.5  

>At1g31240.1 68414.m03823 expressed protein identical to
           hypothetical protein GB:AAD21690 GI:4512621 from
           (Arabidopsis thaliana)
          Length = 277

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 394 LQRRDWENPGVTQLNRLAAHPPFASWRNSEEARTDRPSHS-CAXEW 528
           +++RDW + G T+L R   +    S R+ E  +  R  ++ CA EW
Sbjct: 230 MEQRDWSSGGDTRLERSRDNNNGESGRDLEVKKKIREGYTYCAGEW 275


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
            protein contains Pfam profile: PF03130 PBS lyase
            HEAT-like repeat
          Length = 1116

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +3

Query: 72   NALVIDNVVPGVGRV-W*HRSTVGISRI-PGWRLVLPFLQKLYSDLLLND 215
            NA+  DN V  VG++   HR ++  S++ P W   LP    +    +++D
Sbjct: 984  NAMAYDNAVSAVGKICQFHRDSIDSSQVLPAWLNCLPISNDVLEAKVVHD 1033


>At1g11770.1 68414.m01351 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 406

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = -2

Query: 248 VTLFILKKNLIIVEQ*IRVEFLKKWQH*APTGDPG 144
           VT+F ++KNL  VE     E + KWQ  AP  DPG
Sbjct: 124 VTVFRVEKNL--VEN--ATEMVHKWQFVAPKTDPG 154


>At3g22520.1 68416.m02846 expressed protein
          Length = 600

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 421 GVTQLNRLAAHPPFASWRNSEEARTDRPSHSCAXEWRM 534
           G T LN+L A PP ++ +    A  D PS      WR+
Sbjct: 95  GETDLNQLPAIPPVSTGQGLPYAPVDWPSPGDVWTWRV 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,690,549
Number of Sequences: 28952
Number of extensions: 295399
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)