Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0617.Seq
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   1.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   7.6  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 269 RYGPGPSTGKRPRSRR 222
           RY   PS+G+ PR+RR
Sbjct: 198 RYSDRPSSGRSPRTRR 213


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax
          protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 23 PGLQGEDHPPNLS 61
          PGLQG  H P+L+
Sbjct: 34 PGLQGLHHSPHLN 46


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,348
Number of Sequences: 336
Number of extensions: 3379
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)