Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0617.Seq
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540...    29   5.1  
03_01_0026 + 246682-246866,247791-247915,248452-248625,249377-24...    29   6.7  
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406...    29   6.7  
09_04_0103 - 14623125-14623475,14623574-14623672,14624089-146247...    28   8.9  

>08_02_0580 - 18953208-18953513,18953668-18953868,18953929-18954009,
            18954096-18954410,18954493-18954636,18954733-18954822,
            18954907-18954983,18955122-18955182,18955264-18955490,
            18955581-18955740,18955825-18956025,18956114-18956209,
            18956380-18956565,18956641-18956810,18957044-18957275,
            18958652-18959029
          Length = 974

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 2    GSRTSGSPGLQGEDHPPNLSILVSGGKETNQDFLSSG 112
            G+R  G PG + EDHP  + + V   ++ N     SG
Sbjct: 894  GARFVGIPGTESEDHPRGVMVEVYWDQDDNGSLCISG 930


>03_01_0026 +
           246682-246866,247791-247915,248452-248625,249377-249467,
           249516-250554
          Length = 537

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -3

Query: 341 YHPLRAALSSNPTLRSVPLAATLRRYGPG-PSTGKRPRSRRTWTGVVA 201
           + PL   LS NP L  +PL        P  P   + P  R  W+G +A
Sbjct: 205 FQPLDDFLSENPFLSPIPLGRLYENIDPAKPYMLEDPIRRAVWSGSLA 252


>01_06_0362 +
           28739969-28740232,28740336-28740452,28740560-28740660,
           28741251-28741322,28741433-28741514,28741607-28741687,
           28742548-28742589,28743009-28743047,28743278-28743343,
           28743444-28743590,28743638-28743652
          Length = 341

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +3

Query: 99  SLVAASEQEYSPALNPVVLIDNGRCGVREVPL 194
           S V  +E+ Y+P+++PV+L D  R G + V L
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVAL 216


>09_04_0103 -
           14623125-14623475,14623574-14623672,14624089-14624724,
           14625803-14625964
          Length = 415

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -2

Query: 318 LKQPDSKERPSR-RDPPSLRAWPLYGKTAPFKTNLDRSRRDEK 193
           L  P+ K++  R +  P++R  P++ +T P K   DR+R+ ++
Sbjct: 317 LGPPEEKDQIHRIQANPTIREQPVFIETGPVKPKTDRARQSKR 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,437,760
Number of Sequences: 37544
Number of extensions: 443303
Number of successful extensions: 1065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)