Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0617.Seq
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U21317-4|AAA62523.1|  719|Caenorhabditis elegans Hypothetical
           protein B0495.2 protein.
          Length = 719

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 315 KQPDSK-ERPSRRDPPSLRAWPLYGKTAPFKTNLDRSRRDEKAEPPEHH 172
           K+ D K E+  R D   +R      K   FK   +RS RD+K     HH
Sbjct: 87  KERDKKREKDKRDDRRDVRGPDARQKDRDFKGRQERSGRDQKVHEHRHH 135


>AF040655-7|AAB95044.2|  565|Caenorhabditis elegans Hypothetical
           protein T24E12.9 protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 260 PGPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 162
           PGPST KR       + V A RK+NLPN   P+
Sbjct: 438 PGPSTLKRQSKT---SPVKAKRKKNLPNGPHPL 467


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,834,200
Number of Sequences: 27780
Number of extensions: 337555
Number of successful extensions: 822
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)