Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0617.Seq
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   1.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 172 HLPLSIKTTGFSAGLYSCSLAATKE 98
           H PLS+K  G   GL    LA T +
Sbjct: 319 HTPLSVKFPGMGHGLQPPDLAGTSQ 343


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 646 VLADEYHAYVXPNVXPFKRLANRYLVV 566
           +L D    ++ PN    K LAN +L +
Sbjct: 123 ILKDGVQIFIAPNNGAVKVLANEFLSI 149


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 646 VLADEYHAYVXPNVXPFKRLANRYLVV 566
           +L D    ++ PN    K LAN +L +
Sbjct: 161 ILKDGVQIFIAPNNGAVKVLANEFLSI 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,206
Number of Sequences: 438
Number of extensions: 4342
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)