Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0617.Seq
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   2.4  
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    30   2.4  
At1g32400.2 68414.m03998 senescence-associated family protein co...    28   9.8  
At1g32400.1 68414.m03997 senescence-associated family protein co...    28   9.8  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -3

Query: 365 SYLXLDGVYHPLRAALSSNPTLRSVPLAATLRRYGPGPSTGKRPRSRRTWTGVVATRKRN 186
           S++  DG   P+R    S+P+ R     + +RR  P P   +  RS          R+R+
Sbjct: 551 SHIKQDGSMSPVRGRGKSSPSSRHQKARSPVRRRSPTPVNRRSRRSSSASRSPDRRRRRS 610

Query: 185 LPNTTSP 165
             ++ SP
Sbjct: 611 PSSSRSP 617


>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +2

Query: 563 ADNKIPISESLKWGNVWXNIGVILVSQHNKRXKAKSLLEKH 685
           A NK     S +  N+  ++   LV ++NK  +AKSL+EKH
Sbjct: 482 AYNKASALASNEGENMKRSMDAELVDKYNKEKRAKSLVEKH 522


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 309 PDSKERPSRRDPPSLRAWPLYG-KTAPFKTNLDRSRRDEK--AEPPE 178
           P   +RPSR DP S R    YG  T+ F  N   S R ++  A+P E
Sbjct: 226 PTLDQRPSRSDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNE 272


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 309 PDSKERPSRRDPPSLRAWPLYG-KTAPFKTNLDRSRRDEK--AEPPE 178
           P   +RPSR DP S R    YG  T+ F  N   S R ++  A+P E
Sbjct: 226 PTLDQRPSRSDPWSARMREKYGLDTSEFTYNPSESHRFQQMPAQPNE 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,279
Number of Sequences: 28952
Number of extensions: 331156
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)