Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0615.Seq
         (513 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   0.17 
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    24   0.69 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   1.2  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    21   4.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   8.5  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 0.17
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +1

Query: 319 LVNTIFFGVFLCSASIRFFFSKISQPIFENSFYCSIQKYFN 441
           ++ T+    FLC    R F   I     E  ++  I+KY+N
Sbjct: 291 MLGTVVLSFFLCLIPFRVFILWIILVPEEQVYHLEIEKYYN 331


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 24.2 bits (50), Expect = 0.69
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 424 YYSKNCSRI*AGKFWKKKNEYW 359
           Y+  N  +I A  FWKKK  YW
Sbjct: 61  YFISNVYQILAYNFWKKK--YW 80


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 396 RLGNFGKKKTNTGRTEKYS 340
           +L  FGK+  +TGR  KYS
Sbjct: 4   KLQEFGKRGRSTGRGLKYS 22


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 141 QQKGQGKVSLRKAFQRQHRWANIHATLASDGQHQKSITM-TDYSWS 275
           Q+K  GK+        ++ W  + A    DG ++K   +  DY +S
Sbjct: 92  QKKQAGKILTFVLLNYRNEWNQLVAKYDPDGIYRKQYEIDDDYDYS 137


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = +3

Query: 99  QRWDEHGR 122
           ++WDEHG+
Sbjct: 325 KKWDEHGK 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,930
Number of Sequences: 336
Number of extensions: 1989
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)