Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0615.Seq
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    29   0.31 
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   2.9  
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ...    26   3.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   3.8  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.7  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.7  

>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +1

Query: 67  LLQISESLKWGNV-GMNMGVMLVSQHNKRDKAKSV*E---KHSSGNTAGQIFMLRLL 225
           LL  S+SL++G   G++  V  + +H +R  A        K S+GNT+G  + LRLL
Sbjct: 91  LLNFSQSLQYGQCQGISELVGFIKEHIRRIHAPRYENWDIKMSNGNTSGLEYCLRLL 147


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 292 IVPRFLNFNLVNTIFFGVFLCSASIRFFFSKISQPIFENSF 414
           I  R  + + VNT++ GV     S  F FSK++ P+  NSF
Sbjct: 490 IASRRKSVSAVNTLY-GVGSSYTSESFPFSKLTVPVERNSF 529


>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +1

Query: 292 IVPRFLNFNLVNTIFFGVFLCSASIRFFFSKISQPIFENSFYC 420
           IV +FL +N +  I     LCS   +  F K    ++    YC
Sbjct: 219 IVTKFLEYNNMKHILRAHQLCSEGYQILFEKKLSTVWSAPNYC 261


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 164  DFALSLLLCWLTSITPMFIPTLPHLR 87
            DF  +L  C+   + P+ +P L H+R
Sbjct: 955  DFVYALYACFYLGLIPIPVPPLDHMR 980


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -3

Query: 394 AGKFW--KKKNEYWQNRE 347
           +G  W  KK+N YW++RE
Sbjct: 917 SGPIWQLKKENNYWESRE 934


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 134  ANTTKGTRQSQFEKSIPAATPLGKYSCYACFRWPTSEID 250
            +NT + T+  Q+E  I   + L KY    C R  +  +D
Sbjct: 1084 SNTPQSTQSGQYESEIKGLSKLTKYLQSKCRREHSLRLD 1122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,702
Number of Sequences: 5004
Number of extensions: 33785
Number of successful extensions: 91
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)