Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0615.Seq
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0736 - 24760576-24760690,24760885-24761108,24761188-247612...    29   1.7  
06_03_1407 - 29954374-29954738,29955939-29958558                       28   3.8  
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504...    28   5.1  

>01_05_0736 -
           24760576-24760690,24760885-24761108,24761188-24761248,
           24761909-24763992
          Length = 827

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 125 CSSANTTKGTRQSQFEKSIPAATPL-GKYSCYACFRWPTSEIDYD 256
           CS  +   G R +  E+ IP A    G++ CY   R P+   DYD
Sbjct: 149 CSCPHCLHGQRTAPQEEHIPMARYFAGQHECYRFERSPSVSSDYD 193


>06_03_1407 - 29954374-29954738,29955939-29958558
          Length = 994

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 155 LSLLLCWLTSITPMFIPTLPHLRDSLICNNEI 60
           L++  C L    P+ +PTLP LR   + NN +
Sbjct: 99  LTIAACCLPGHVPLELPTLPSLRHLNLSNNNL 130


>09_02_0152 +
           5040845-5041001,5042645-5042757,5043556-5043816,
           5043954-5044058,5044726-5044791,5044882-5044999,
           5045018-5045103,5045900-5046424,5046534-5047115,
           5047203-5047385,5049326-5049392,5049685-5049791,
           5049977-5050076,5050228-5050313,5050394-5050485,
           5050591-5050705,5050792-5050983
          Length = 984

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 96  GQRWDEHGRDARQPTQQKGQGKVSLRKAF 182
           G  WD+HG D  +   + G+ K+S  + F
Sbjct: 426 GSLWDDHGSDETKKDDKLGEKKLSTTRKF 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,917,853
Number of Sequences: 37544
Number of extensions: 192566
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)