Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0615.Seq
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AL110479-8|CAB60316.2|  337|Caenorhabditis elegans Hypothetical ...    27   6.0  
U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical...    27   7.9  

>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical protein
            ZK593.4 protein.
          Length = 1477

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 205  FAQRCCRWNAFL-KLTLPCPFCCVG*RASRP 116
            F  RCC W+ FL KL   C  C    R  RP
Sbjct: 1230 FHVRCCEWSPFLEKLPEGCFLCVRCLRGQRP 1260


>AL110479-8|CAB60316.2|  337|Caenorhabditis elegans Hypothetical
           protein Y105C5B.10 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 292 IVPRFLNFNLVNTIFF--GVFL 351
           IVPRFLN ++ NT F   GVFL
Sbjct: 184 IVPRFLNKSMTNTFFAIGGVFL 205


>U53341-7|AAC69111.3|  744|Caenorhabditis elegans Hypothetical
           protein F49E10.1 protein.
          Length = 744

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 203 CPAVLPLECFSQTDFALSLLLCWLTSIT 120
           CP  L + C       L+L+L WL ++T
Sbjct: 55  CPGYLTVHCQCDESMGLTLILQWLPNLT 82


>AF016450-13|AAB65988.2|  472|Caenorhabditis elegans Hypothetical
           protein B0238.9 protein.
          Length = 472

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 38  HFFSTNERFRCY--RLASLLNGATLG*TWA*CSSANTTKG 151
           H FST  R R +  R AS +   T+G TW+  S A  T G
Sbjct: 189 HTFSTTTRSRLHTDRSASSILTHTIGRTWSESSFAGETNG 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,993,253
Number of Sequences: 27780
Number of extensions: 187148
Number of successful extensions: 528
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)