Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0615.Seq
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   7.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 103 VGMNMGVMLVSQHNKRDK 156
           +G+N+G +  ++HN R K
Sbjct: 80  LGLNLGFLAWAKHNPRGK 97


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 5   CEFGHEIQFIKHFFSTNERFRCY 73
           C FGH +     F S +E  R +
Sbjct: 605 CLFGHNVTLANKFESLSEPLRIH 627


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 192 HRWANIHATLASDGQHQKSITMTDYSWS 275
           + W  I     SD + Q +I   DY+++
Sbjct: 33  YEWKYIDYDFGSDEKRQAAIQSGDYNYT 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,184
Number of Sequences: 438
Number of extensions: 2291
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)