Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0615.Seq
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta...    28   4.2  
At2g46590.1 68415.m05811 Dof zinc finger protein DAG2 / Dof affe...    27   9.8  
At2g28390.1 68415.m03450 SAND family protein similar to Sand (GI...    27   9.8  

>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 598

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 100 NVGMNMGVMLVSQHNKRDKAKSV*EKHSSGNTA 198
           N+  +M   LV ++NK  +AKS+ EKH   +++
Sbjct: 496 NMKRSMDAELVDKYNKEKRAKSLVEKHREDSSS 528


>At2g46590.1 68415.m05811 Dof zinc finger protein DAG2 / Dof
           affecting germination 2 (DAG2) identical to SP|Q9ZPY0
           DOF zinc finger protein DAG2 (Dof affecting germination
           2) {Arabidopsis thaliana}
          Length = 357

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 162 LCLVPFVVLADEHHAHVH 109
           L L+ F V+ D+HH HVH
Sbjct: 163 LNLLSFPVMQDQHHHHVH 180


>At2g28390.1 68415.m03450 SAND family protein similar to Sand
           (GI:3928166) [Takifugu rubripes]; contains Pfam PF03164:
           SAND family protein
          Length = 607

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 228 LKQA*HEYLPSGVAAGMLFSN*LCLVPFVVLADEHHAHVHPN 103
           L+QA    L    A+G+LFS  +C    V LA    A +HP+
Sbjct: 326 LRQATGTILQEVCASGVLFSLLMCRHKVVSLAGAQKASLHPD 367


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,682
Number of Sequences: 28952
Number of extensions: 165682
Number of successful extensions: 396
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)